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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTTCTTGGAGCGACGCCTGCAGACTCTTGTTTTCAAATCTGGCATGGCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAGgtgagattgacgtttacacgcttcttccctcaacgtctagcggttgccccgcgtcttaaatctatttaggattactgaacatctctaaccaatgatcacg...

Basic information

species Physcomitrella patens
transcript PP1S54_123V6.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S54_123V6.2 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EDO97033 (Chlamydomonas reinhardtii), 5'ss of exon 3
AAAATTTCTTGGAGCGACGCCTGCAGACTCTTGTTTTCAAATCTGGCATGGCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAGgtgagattgacgtttacacgcttcttccctcaacgtctagcggttgccccgcgtcttaaatctatttaggattactgaacatctctaaccaatgatcacg-
   | ||| ||||||| ||||||||||| || || |||||    ||| |||||||||||||||||||||| || ||| |||||   ||| | |||||  ||||||  |       |           |      |   || ||  | | || |  |   |        |    |        |  |  |        ||| 
--GACTTCCTGGAGCGCCGCCTGCAGACCCTGGTCTTCAAGCAGGGCCTGGCCAAGTCCATCCACCACGCGCGCGTGCTGATCCGCCAGCGCCACATCCGgtgagcatagaaacaatcaaaagggcacgggggaggggag-ggagggcgcgggagtgggacaggggcggcgacagcagcagccgattccgggctgcaacgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37848758|gb|BJ606766.1|BJ606766
EST:     GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAG                         AGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG
genomic: GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAGgtgagattga ... ggttgaacagAGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG
EST: gi|37833274|gb|BJ591286.1|BJ591286
EST:     GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAG                         AGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG
genomic: GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAGgtgagattga ... ggttgaacagAGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG
EST: gi|37849936|gb|BJ607944.1|BJ607944
EST:     GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAG                         AGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG
genomic: GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAGgtgagattga ... ggttgaacagAGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG
EST: gi|22131779|gb|BQ826796.1|BQ826796
EST:     GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAG                         AGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG
genomic: GCCAAGTCCATCCACCACGCCCGGGTGTTGATCAAGCAGAGGCACATTAGgtgagattga ... ggttgaacagAGTTGGAAAGCAAATTGTTGATGTTCCATCATTTATGGTCCGACTTGAGAG