1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGCGTGTAGGGTATAGATTTGAAGGCCGGGGGTCGCAACAAGAAGACCAAGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactccccaagaagcattgcttgttttaatagttgtctatccgaatttactcttcgaaacctgagtttcaattagggttttctcgtggattgtttgactacactattgggcagtcaagttattttttcttttagttactttcatttcttttttgttgaatggtgtgattatttttcgcag
species | Physcomitrella patens |
transcript | PP1S536_8V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|67695575|gb|BJ955808.1|BJ955808
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|18361668|gb|BJ193734.1|BJ193734
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|162260382|gb|FC436061.1|FC436061
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|162262024|gb|FC437871.1|FC437871
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|37839361|gb|BJ597369.1|BJ597369
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|18372314|gb|BJ203916.1|BJ203916
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|162179699|gb|FC355757.1|FC355757
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATGCAGTTGTCEST: gi|37850800|gb|BJ608808.1|BJ608808
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCCCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|162275088|gb|FC450947.1|FC450947
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|162262023|gb|FC437870.1|FC437870
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|37841509|gb|BJ599517.1|BJ599517
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|67694170|gb|BJ954403.1|BJ954403
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|67570871|gb|BJ943695.1|BJ943695
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|37834403|gb|BJ592415.1|BJ592415
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|162271554|gb|FC447439.1|FC447439
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTCEST: gi|67577660|gb|BJ949827.1|BJ949827
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
EST: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAG CTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
genomic: AGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactcccca ... tttttcgcagCTGTATCGGTTCCTGGTCAGGAGAACCGATGCCCCTTTCAATTCAGTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGTGTAGGGTATAGATTTGAAGGCCGGGGGTCGCAACAAGAAGACCAAGCGTACAGCGCCCAAGAGCGACAATGTGTACCTGAAGCTTCTTGTGAAGgtactccccaagaagcattgcttgttttaatagttgtctatccgaatttactcttcgaaacctgagtttcaattagggttttctcgtggattgtttgactacactattgggcagtcaagttattttttcttttagttactttcatttcttttttgttgaatggtgtgattatttttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC