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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGAGGTCTATCCAGTTGCAGAGAGCGGCTTCGTTTCGCTACACGTCGgtaagttggttgagccttgagcttagagagcttgtggtggtgctgggaatgaccttcctgggctactctactcgactactctgctttgctcggatgctgt...

Basic information

species Physcomitrella patens
transcript PP1S52_69V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162211343|gb|FC387573.1|FC387573
EST:     GGCTTCGTTTCGCTACACGTCG                         GTAATTCATCTTCGTTGGTAGCCGTTTTGGTGTTCACGACTGCCATGGTCT
genomic: GGCTTCGTTTCGCTACACGTCGgtaagttggt ... tttggtgcagGTAATTCATCTTCGTTGGTAGCCGTTTTGGTGTTCACGACTGCCATGGTCT
EST: gi|100424181|gb|BY958355.1|BY958355
EST:     TGCAGAGAGCGGCTTCGTTTCGCTACACGTCG                         GTAATTCATCTTCGTTGGTAGCCGTTTTGGTGTTCACGACTGCCATGGTCT
genomic: TGCAGAGAGCGGCTTCGTTTCGCTACACGTCGgtaagttggt ... tttggtgcagGTAATTCATCTTCGTTGGTAGCCGTTTTGGTGTTCACGACTGCCATGGTCT
EST: gi|67575409|gb|BJ948233.1|BJ948233
EST:     GCGGCTTCGCTTTCGCTACACGTCGG                         GTAATTCATCTTCGTTGGTAGCCGTTTTGGTGTTCACGACTGCCATGGTC
genomic: GCGGCTTCG-TTTCGCTACACGTC-Ggtaagttggt ... tttggtgcagGTAATTCATCTTCGTTGGTAGCCGTTTTGGTGTTCACGACTGCCATGGTC