1 5' 3' | 2 5' 3' | 3 5' 3' |
TGACCGTGAAATCGTTCTAAGCTTGAAAAATTCGAGTCAACGTCACTCCTTTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgacaattgcaatctgaacttagagttcttttttaatcttcgcttgtgtactgccttcctccgtatggacatgaagataaaaagaatgcgtggagcagttgggagggtctcttttaagatttggatttcaaagcagccttaggattcggttaccaagtaagactcatgacttgttcattaaatttcag
species | Physcomitrella patens |
transcript | PP1S4_166V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGT ATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGAEST: gi|162150222|gb|FC326307.1|FC326307
genomic: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgac ... taaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
EST: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGT ATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGAEST: gi|18361263|gb|BJ193328.1|BJ193328
genomic: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgac ... taaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
EST: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGT ATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
genomic: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgac ... taaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCGTGAAATCGTTCTAAGCTTGAAAAATTCGAGTCAACGTCACTCCTTTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgacaattgcaatctgaacttagagttcttttttaatcttcgcttgtgtactgccttcctccgtatggacatgaagataaaaagaatgcgtggagcagttgggagggtctcttttaagatttggatttcaaagcagccttaggattcggttaccaagtaagactcatgacttgttcattaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG