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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCGACGCTCGTCACGTCTTCAGATCCGGTGCAGAGGCAGTTCGTCACGTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcatttccccccttattttggtcctcgttatggcggtggcatctgtcgactgaagaggattttttaccgtcgttttggtgctacgttttctgtc...

Basic information

species Physcomitrella patens
transcript PP1S4_134V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162263831|gb|FC439152.1|FC439152
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162272137|gb|FC447931.1|FC447931
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|19789113|gb|BQ041103.1|BQ041103
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208355530|gb|DC942650.1|DC942650
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162263830|gb|FC439151.1|FC439151
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208399861|gb|DC925171.1|DC925171
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67570876|gb|BJ943700.1|BJ943700
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|22132186|gb|BQ827023.1|BQ827023
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208373738|gb|DC936551.1|DC936551
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162226945|gb|FC403328.1|FC403328
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18326487|gb|BJ158486.1|BJ158486
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67571554|gb|BJ944378.1|BJ944378
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTA
EST: gi|100436575|gb|BY961286.1|BY961286
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|37851643|gb|BJ609651.1|BJ609651
EST:     TCGGGGTTCCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: TCGGGGTT-CATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67508306|gb|BJ941175.1|BJ941175
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|6102263|gb|AW126733.1|AW126733
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGC
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGC
EST: gi|19788107|gb|BQ040718.1|BQ040718
EST:     CTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: CTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67570046|gb|BJ942870.1|BJ942870
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18357500|gb|BJ189559.1|BJ189559
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162236395|gb|FC412762.1|FC412762
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162207108|gb|FC382222.1|FC382222
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|100389923|gb|BY971275.1|BY971275
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208393349|gb|DC904009.1|DC904009
EST:     ATCGGGGTTCATGTTGGACTCGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67692639|gb|BJ952872.1|BJ952872
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|100411523|gb|BY974678.1|BY974678
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162236396|gb|FC412763.1|FC412763
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18334485|gb|BJ166502.1|BJ166502
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67569359|gb|BJ942183.1|BJ942183
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162260487|gb|FC436114.1|FC436114
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|19780709|gb|BQ039599.1|BQ039599
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162226946|gb|FC403329.1|FC403329
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162277189|gb|FC453411.1|FC453411
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162206720|gb|FC383193.1|FC383193
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67508349|gb|BJ941217.1|BJ941217
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162270662|gb|FC446587.1|FC446587
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18340567|gb|BJ172595.1|BJ172595
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162251428|gb|FC425548.1|FC425548
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67576910|gb|BJ949734.1|BJ949734
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67699918|gb|BJ960151.1|BJ960151
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|15320110|gb|BI487671.1|BI487671
EST:     TTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: TTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67692619|gb|BJ952852.1|BJ952852
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162207109|gb|FC382223.1|FC382223
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|22492527|gb|BU052450.1|BU052450
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162200387|gb|FC376672.1|FC376672
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|100373775|gb|BY967804.1|BY967804
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67694898|gb|BJ955131.1|BJ955131
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67574615|gb|BJ947439.1|BJ947439
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67576913|gb|BJ949737.1|BJ949737
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162277188|gb|FC453410.1|FC453410
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208352238|gb|DC901731.1|DC901731
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162274906|gb|FC450557.1|FC450557
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162274905|gb|FC450556.1|FC450556
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162206719|gb|FC383192.1|FC383192
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162272136|gb|FC447930.1|FC447930
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67698033|gb|BJ958266.1|BJ958266
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162267248|gb|FC442660.1|FC442660
EST:     TTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: TTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|19789686|gb|BQ041451.1|BQ041451
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|6227420|gb|AW156019.1|AW156019
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67569378|gb|BJ942202.1|BJ942202
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162270661|gb|FC446586.1|FC446586
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|100413742|gb|BY974966.1|BY974966
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|37822635|gb|BJ580701.1|BJ580701
EST:     TCGGGGTTCCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: TCGGGGTT-CATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162260488|gb|FC436115.1|FC436115
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208394296|gb|DC904116.1|DC904116
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18339592|gb|BJ171619.1|BJ171619
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18357947|gb|BJ190006.1|BJ190006
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67570203|gb|BJ943027.1|BJ943027
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18338080|gb|BJ170104.1|BJ170104
EST:     CGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: CGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162234230|gb|FC409768.1|FC409768
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|37852965|gb|BJ610973.1|BJ610973
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208363982|gb|DC950358.1|DC950358
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208349265|gb|DC918015.1|DC918015
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162272661|gb|FC448287.1|FC448287
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|162200386|gb|FC376671.1|FC376671
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTNTG                         ATCCATNTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18359560|gb|BJ191621.1|BJ191621
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208349728|gb|DC917906.1|DC917906
EST:     ATCGGGGTTCATGTTGGACTCGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|18330263|gb|BJ162269.1|BJ162269
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|208366608|gb|DC955642.1|DC955642
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
EST: gi|67694177|gb|BJ954410.1|BJ954410
EST:     GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTG                         ATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA
genomic: GTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 583

CTTGCGACGCTCGTCACGTCTTCAGATCCGGTGCAGAGGCAGTTCGTCACGTCGGGGTTCATGTTGGACTTGTCGGAAACGGTTATTCCGGCCTCTTTTGgtacgttcat ... atttgtgcagATCCATTTGCGGAAGCAGATGTTGAGGATAGTGGAGTAGGTTCGAAAGGAAGTGGATATGTGCATGTTAGAGTGCAGCAAAGGAATGGACGAAAGAGCTT




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