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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGCCGGAACCTGACGTTCTCATCCCTCTCGACATGCGTGCAGCCATTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctgaaggcctccttgttgcagaagccgcgtcttattcttgtttactcgcagagtctacttcgtgcagggagtctaggtcataattttccaaag...

Basic information

species Physcomitrella patens
transcript PP1S49_57V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100447158|gb|CJ971457.1|CJ971457
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18352475|gb|BJ184529.1|BJ184529
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100352429|gb|BY983204.1|BY983204
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGGTAAG                     
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTC-----Ggtaaggtctg ... ccatct
EST: gi|18330204|gb|BJ162210.1|BJ162210
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100446573|gb|CJ970872.1|CJ970872
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100409287|gb|BY991937.1|BY991937
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18372576|gb|BJ204178.1|BJ204178
EST:     AATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: AATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|67703837|gb|BJ964070.1|BJ964070
EST:     TCTACTTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TCTAC-TCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|67701889|gb|BJ962122.1|BJ962122
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|67704738|gb|BJ964971.1|BJ964971
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATCTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100409448|gb|BY992016.1|BY992016
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100384408|gb|BY987267.1|BY987267
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCAGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100397772|gb|BY990393.1|BY990393
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100388364|gb|BY951966.1|BY951966
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|67701577|gb|BJ961810.1|BJ961810
EST:     GCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: GCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18327196|gb|BJ159198.1|BJ159198
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGGTAAG                     
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTC-----Ggtaaggtctg ... ccatct
EST: gi|100444249|gb|BY982278.1|BY982278
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100449936|gb|CJ974011.1|CJ974011
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100383106|gb|BY987017.1|BY987017
EST:     CTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: CTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100374035|gb|BY967907.1|BY967907
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|208397792|gb|DC912561.1|DC912561
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100388247|gb|BY951849.1|BY951849
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100368411|gb|BY966997.1|BY966997
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|67702689|gb|BJ962922.1|BJ962922
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100446785|gb|CJ971084.1|CJ971084
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100433790|gb|BY960708.1|BY960708
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100389275|gb|BY971025.1|BY971025
EST:     TTCTACTCTTTCAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100384625|gb|BY950615.1|BY950615
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100444985|gb|BY982813.1|BY982813
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100448955|gb|CJ973254.1|CJ973254
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100399338|gb|BY954320.1|BY954320
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100442667|gb|BY981492.1|BY981492
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGTAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18351874|gb|BJ183926.1|BJ183926
EST:     GCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: GCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|67716225|gb|BJ966485.1|BJ966485
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100443835|gb|BY982063.1|BY982063
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100429787|gb|BY978088.1|BY978088
EST:     TTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100392820|gb|BY971899.1|BY971899
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100390103|gb|BY989183.1|BY989183
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18330517|gb|BJ162523.1|BJ162523
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGNAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100423900|gb|BY976581.1|BY976581
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|208351625|gb|DC910027.1|DC910027
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100423525|gb|BY958301.1|BY958301
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGGTAAG                     
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTC-----Ggtaaggtctg ... ccatct
EST: gi|18327564|gb|BJ159567.1|BJ159567
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100385855|gb|BY951049.1|BY951049
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100403415|gb|BY991191.1|BY991191
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100383921|gb|BY987178.1|BY987178
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18329306|gb|BJ161312.1|BJ161312
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100384441|gb|BY987300.1|BY987300
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100356216|gb|BY946253.1|BY946253
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18342439|gb|BJ174474.1|BJ174474
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18367681|gb|BJ199764.1|BJ199764
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100383735|gb|BY969264.1|BY969264
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100394841|gb|BY989952.1|BY989952
EST:     ACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: ACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100447278|gb|CJ971577.1|CJ971577
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18329481|gb|BJ161487.1|BJ161487
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100360927|gb|BY946826.1|BY946826
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCGTATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100444760|gb|BY982589.1|BY982589
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100409478|gb|BY992031.1|BY992031
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100376708|gb|BY949426.1|BY949426
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100438498|gb|BY979987.1|BY979987
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|208345213|gb|DC909491.1|DC909491
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100399279|gb|BY954290.1|BY954290
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18351891|gb|BJ183943.1|BJ183943
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100448156|gb|CJ972455.1|CJ972455
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100449363|gb|CJ973662.1|CJ973662
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|18328131|gb|BJ160135.1|BJ160135
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100439847|gb|BY980269.1|BY980269
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
EST: gi|100447290|gb|CJ971589.1|CJ971589
EST:     TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG                         GTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 29 (upstream exon), 19 (downstream exon)
Score: 5

TAAGCCGGAACCTGACGTTCTCATCCCTCTCGACATGCGTGCAGCCATTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... ccatctgcagGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCGATTTCTGATCAAGCTGCGGAATTAGTACCAAACCATTCGCCATGAAGAT




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