Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100447540|gb|CJ971839.1|CJ971839EST: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAG ATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
genomic: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAGgtagggcgag ... gcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
EST:
gi|100451386|gb|CJ974739.1|CJ974739EST: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAG ATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
genomic: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAGgtagggcgag ... gcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
EST:
gi|67570697|gb|BJ943521.1|BJ943521EST: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAG ATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
genomic: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAGgtagggcgag ... gcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAATTCGGTTTGAAGGTGGTGGGTTCATTTCAGCGACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAGgtagggcgagatgtagcggcttttccgggagtttttttattagggttgcagtgtgtcagctgagctagtccttgatgagtctgttttgtccgttgtttcg
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG