1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAGTGGGGCGCTCGGGTGCCCATGACGGTGTTGTGGGTGAACGACAATCATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAGgtgcgtctctcatgcttcacccttcaagttttcaagagaatgggagaacgtatagtgacgtgttttttttttttttttttttttttttttggtatgtggaagtggacactccgtgtttctgaattatgagcgcgatttttgtgcatctccag
species | Physcomitrella patens |
transcript | PP1S49_269V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAG ATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGGEST: gi|18344169|gb|BJ176208.1|BJ176208
genomic: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAGgtgcgtctct ... gcatctccagATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGG
EST: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAG ATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGGEST: gi|18346729|gb|BJ178774.1|BJ178774
genomic: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAGgtgcgtctct ... gcatctccagATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGG
EST: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAG ATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGGEST: gi|208368314|gb|DC935669.1|DC935669
genomic: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAGgtgcgtctct ... gcatctccagATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGG
EST: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAG ATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGGEST: gi|18351789|gb|BJ183841.1|BJ183841
genomic: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAGgtgcgtctct ... gcatctccagATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGG
EST: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAG ATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGG
genomic: ATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAGgtgcgtctct ... gcatctccagATCGGTGCAGGGCAGAGAAAGCCAAAGCAACTAACAAAGCCTGAGTTAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTGGGGCGCTCGGGTGCCCATGACGGTGTTGTGGGTGAACGACAATCATGTGGTGCAGGTCAAGACGGAGGAGACAGACGGTCATTTCGCTCTGCAGgtgcgtctctcatgcttcacccttcaagttttcaagagaatgggagaacgtatagtgacgtgttttttttttttttttttttttttttttggtatgtggaagtggacactccgtgtttctgaattatgagcgcgatttttgtgcatctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG