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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga...

Basic information

species Physcomitrella patens
transcript PP1S49_260V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g18580.1 (Oryza sativa), 5'ss of exon 3
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga----
 ||||| || || ||||| ||||| ||||| || |||||||| ||| |||| ||||||| | | || ||| ||||||| |||||||||||||| |||||||||| ||     |  | |  |    | | |  ||| |||||  ||| |  ||| |  | |      | ||  |     | ||||    |  || |  |      
GAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGGCTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGgtgaatta----cgttttcctgccttgtcaccttttttttttgcataggttgcatgctactagctcaatttactaactcgtaatacatttttgttggttcttaa

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g18570.1 (Oryza sativa), 5'ss of exon 4
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga---------
 ||||| || || || || ||||| ||||| || |||||||| ||| |||| ||||||| | | || ||| ||||||| |||||||||||||| |||||||| | ||    |        |||    || |  | || | |  ||| |   || |  |  |  |  | ||  |     ||||||  ||| ||  | |            
GAAGGCTGTGGTGATCCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGGCTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGgtcaattacgtc--------tttcccatttgtctactgtgttgcataggtcgcatgctaggagttcaatttactaactcataat-acattgttgttagttcttaatgtt

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os02g21900.1 (Oryza sativa), 5'ss of exon 2
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatca-ttgtgtgc--gtagtgcgtttgtattt-gtcctgtccataattgcatcgtgatcatga--
    |  || || || ||||||   ||||  ||  ||||||| ||| |||| |||||||   | || |||  |||||| ||||||||||||||||||||||||| |||      ||||   || |||    | || |||  ||   |||  |||  ||| |  | |  | | | ||  |||| || |             ||    
----GTGGTAGTGATCCATGTGTTGTACCATCTGTGCAAGGCATTCAAGAAAATCCATGTTAGGCTTGTCAAGGAGCTTGAGAAGAAGTTCAGTGGCAAGgtgaattgc-----gtgtt-cttagttgcctacttgtttacatagcttgcatgctagtattttgataatgtctagtgttgtctatcagactgcaaaatctatagct

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G030016_T01 (Zea mays), 5'ss of exon 4
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga---------------
 ||||| || || || || || || |||||||| ||||||||||||  ||||||||||| | | |||||| |||||||||||||||| ||||| |||||||||| ||             | | |||||  |||| ||| ||    |||    |   |  |||| ||| ||  ||     ||  | |  | | | |||||               
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTCAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgaatt-------------tctcgttttttatttttttctactgctgttcatggtttaggtttatatatg--ctaattgtagctactacataaacatgaacggggtaatgcatt

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G458974_T03 (Zea mays), 5'ss of exon 1
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga
 ||||| || || || || || || |||||||| |||||||||||   ||||||||||| | | |||||| |||||||||||||||| ||||| |||||||||| ||   |    | || ||||  |    | | || ||  |  ||  |                                                  
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTTAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgattttctctttttttgttttttct----actgctgttcgtggtttag--------------------------------------------------

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G458974_T02 (Zea mays), 5'ss of exon 4
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagat-ttctt--tttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga
 ||||| || || || || || || |||||||| |||||||||||   ||||||||||| | | |||||| |||||||||||||||| ||||| |||||||||| ||   |    | || ||||  |   | | ||| |  ||||   || | |||  | ||    |     |       ||  ||  |  |  ||    |  
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTTAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgattttctctttttttgttttttctactgctgttcgtggtttaggtttatatgctaattgtagctac---tacataaacctgaacggggtaatgcatttag

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G085420_T01 (Zea mays), 5'ss of exon 5
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgt---ccataattgcatcgtgatcatga-
 ||||| || || || || || || |||||||| |||||||||||   ||||||||||| | | |||||| |||||||||||||||| ||||| |||||||||| ||   | |  | |  |||| | |    ||  |  |  |  ||  ||   ||    | |||||  |      |   ||  ||  |  |  ||    |   
GAAGGCTGTTGTCATCCACGTCCCATACCGCCTGCGCAAGGCCTTTAGGAAGATCCATGTCAGACTCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgatttt--ctcttttttgttttttctactgttgttcgtggt--ttaggtttatatgctgattgtagctactacataaacctgaacggggtaatgcatttagt

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G053652_T02 (Zea mays), 5'ss of exon 3
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga----
 ||||| || || || || || || |||||| | || |||||||||  ||||||||||| | |  ||||| |||||||||||||||| ||||| |||||||||| ||    |  || |  ||| ||||||    |  | |    | ||| |  |      ||  | |  ||      |   ||  |  |  ||    |      
GAAGGCTGTTGTGATCCACGTCCCATACCGCTTGCGTAAGGCCTTCAGGAAGATCCATGTCAGGATCGTCAGGGAGCTGGAGAAGAAATTCAGCGGCAAGgtgaatt---tctcgttttttttggttttactgctgctgtccgaagtgtatatgctaattgta-gcaactgcataagcttgaacggggtaatggatttagttgc

upper sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattg-catcgtgatcatga
||| || || || ||| | || || | | |  |  | || || ||||  ||||| ||| |||| |||||| | ||||| ||||||||||||||||| ||||| | ||     || ||   | |   |||||        | | || |   ||     |   | | ||      ||| |  |  ||  |||  |  |||   
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgc--tctgtctttagtaaatgcctaaacaatagttgtactatctctct-tacacactctgccattctttttcattttcttcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67696572|gb|BJ956805.1|BJ956805
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|15327110|gb|BI487590.1|BI487590
EST:     CTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: CTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162215371|gb|FC391867.1|FC391867
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162275531|gb|FC451286.1|FC451286
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67694691|gb|BJ954924.1|BJ954924
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|208353136|gb|DC913894.1|DC913894
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162248239|gb|FC422532.1|FC422532
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162251161|gb|FC427218.1|FC427218
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67577646|gb|BJ949813.1|BJ949813
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|19781761|gb|BQ039768.1|BQ039768
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67697092|gb|BJ957325.1|BJ957325
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162206453|gb|FC383446.1|FC383446
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|19789512|gb|BQ041351.1|BQ041351
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162234731|gb|FC409243.1|FC409243
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAAGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67573706|gb|BJ946530.1|BJ946530
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67718680|gb|BJ968939.1|BJ968939
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|18339755|gb|BJ171782.1|BJ171782
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67724603|gb|BJ974862.1|BJ974862
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67573189|gb|BJ946013.1|BJ946013
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67704457|gb|BJ964690.1|BJ964690
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67717984|gb|BJ968243.1|BJ968243
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67726488|gb|BJ976747.1|BJ976747
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67717440|gb|BJ967699.1|BJ967699
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67718343|gb|BJ968602.1|BJ968602
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162251160|gb|FC427217.1|FC427217
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|100432330|gb|BY960430.1|BY960430
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67716768|gb|BJ967028.1|BJ967028
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|19781685|gb|BQ039754.1|BQ039754
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67726440|gb|BJ976699.1|BJ976699
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162159664|gb|FC336050.1|FC336050
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162245005|gb|FC424963.1|FC424963
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTTTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67691408|gb|BJ951641.1|BJ951641
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|100420391|gb|BY976001.1|BY976001
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67723894|gb|BJ974153.1|BJ974153
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162206454|gb|FC383447.1|FC383447
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162232665|gb|FC409216.1|FC409216
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162159665|gb|FC336051.1|FC336051
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|19790789|gb|BQ042056.1|BQ042056
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162209119|gb|FC385338.1|FC385338
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162216018|gb|FC393475.1|FC393475
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|208379921|gb|DC927647.1|DC927647
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162275415|gb|FC451794.1|FC451794
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162262419|gb|FC439683.1|FC439683
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162248238|gb|FC422531.1|FC422531
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162234730|gb|FC409242.1|FC409242
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGTGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162247664|gb|FC421707.1|FC421707
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162205019|gb|FC381728.1|FC381728
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67579266|gb|BJ951397.1|BJ951397
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|7207466|gb|AW561467.1|AW561467
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162269008|gb|FC445500.1|FC445500
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162216019|gb|FC393476.1|FC393476
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162220106|gb|FC395400.1|FC395400
EST:     GAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: GAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67726832|gb|BJ977091.1|BJ977091
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67725289|gb|BJ975548.1|BJ975548
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162262420|gb|FC439476.1|FC439476
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162247663|gb|FC421706.1|FC421706
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTTTGAGACCTCCCAAGAAGGGT
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162275530|gb|FC451285.1|FC451285
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTTTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162220105|gb|FC395399.1|FC395399
EST:     GAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTTTGAGACCTCCCAAGAAGGGC
genomic: GAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162260632|gb|FC436636.1|FC436636
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67579142|gb|BJ951293.1|BJ951293
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67508188|gb|BJ941059.1|BJ941059
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|100385961|gb|BY951155.1|BY951155
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162246458|gb|FC421099.1|FC421099
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162209118|gb|FC385337.1|FC385337
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTTTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162232664|gb|FC409215.1|FC409215
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67712896|gb|BJ966345.1|BJ966345
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67712950|gb|BJ966399.1|BJ966399
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67717937|gb|BJ968196.1|BJ968196
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162246457|gb|FC421098.1|FC421098
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCTCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162262418|gb|FC439682.1|FC439682
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67507956|gb|BJ940830.1|BJ940830
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67717216|gb|BJ967475.1|BJ967475
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67727095|gb|BJ977354.1|BJ977354
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|162275414|gb|FC451793.1|FC451793
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67725733|gb|BJ975992.1|BJ975992
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|19780225|gb|BQ039533.1|BQ039533
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67725957|gb|BJ976216.1|BJ976216
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67570364|gb|BJ943188.1|BJ943188
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67507863|gb|BJ940739.1|BJ940739
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67709817|gb|BJ965633.1|BJ965633
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
EST: gi|67724658|gb|BJ974917.1|BJ974917
EST:     AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAG                         GATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC
genomic: AGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 38

CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttgga ... tgtttttcagGATGTTATAGTTATTGCCACCAGGCGCATTCTGAGACCCCCCAAGAAGGGCTCAGCCGTGAACAGGCCAAGGAGCAGAACCTTGACCGCTGTCCACGAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattgcatcgtgatcatga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT