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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtagaatgtgt...

Basic information

species Physcomitrella patens
transcript PP1S49_256V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os06g09290.2 (Oryza sativa), 5'ss of exon 1
TCCAGCTCTGCGCACCATGGC---GGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcct-cgatgtagaatgtgt
    |    | |  |||||||   |||    |  |||||  |  | || ||||||||||||  ||||||||||||||||||||||||||| ||||| ||||| || |||||||  |    ||   |         |  |||| | | |  | |   ||||    | |||       | ||   |     ||   |||  |    
---GGAGGGGGGAGCCATGGCGCCGGAGCCCGAGGACGACATCATGAACGAGAAGAACCCGCGCCCGCTCGACGAGGACGACATCGCCCTCCTCAAGACCTACgtgagtgccc-cgcagatcggatcgatccccctctcgtcttctcctcctagggtggaaattcttcggccgatctgagcttgattcacgggttagggtcccc

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 1
TCCAGCTCTGCGC-ACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgaga-acatttagtgcgg-cctcgatgtagaatgtgt
  | ||   | || |    | ||||    |  |||||  |  | || |||||||||||   |||||||||||||||||||||||| || ||||| ||||| || |||| ||     ||   | | |    | | | |  ||| |   |    |||        || |    |   |  |  ||| |||||   | |  |  | 
-GCGGCGGGGAGCCATGGCGCCGGAGCCGGAAGACGACATCATGAACGAGAAGAACCCCCGCCCGCTCGACGAGGACGACATCGCTCTCCTCAAGACCTACgtgagtgtccccccgctagatctccctgatctcttc-ccatctaggggtgctttctggtgatctggtcccatggtgggctcgggcctcgggctggggttag-

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 1
-TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtagaat-gtgt-------
    ||  | || ||    | ||||    |  || ||| |  | || |||||||| ||   |||||||||||||||||||||||| || ||||||||||||||  |||||     |||  | ||| |   | | ||    || |  ||   || | |       | | ||   | || || ||    | |   || | ||||       
CAGGAGGACAGC-CATGGCGCCGGAGCCGGAGGATGATATTATGAACGAGAAGAATCCCCGCCCGCTCGACGAGGACGACATCGCGCTCCTCAAAACCTATgtgcgtgcctcgaccct--cgtttggatctctctg----atct--cgtggatctagggttctttggtgattttgtattggggtagggcttaggagttgtgttccctcg

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G110185_T01 (Zea mays), 5'ss of exon 1
-TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtagaatgtgt-----
    ||  | || ||    | ||||    |  || ||| |  | || |||||||| ||   ||||||||||||||| |||||||| || ||||||||||||||  |||   |     | ||  || | |  | |    | || |  ||   || | |    |  | | |      |   | || |  |   | | |  |||     
CAGGAGGACAGC-CATGGCGCCGGAGCCGGAGGATGATATTATGAACGAGAAGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtg---acacgatccccgtttggatctctcttatgatct--cgtggatctagggttgtttggtgctttggtctcgggggcgggcctttggagctgtgttcg

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA03G42370.1 (Glycine max), 5'ss of exon 1
TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttt--tcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtagaatgtgt-
  ||         |      | ||   ||  |||||| |     | |||||||| ||   ||| ||||||||||| ||||||||||||||||||||||||||| ||  || |  | ||| ||   |  |    || | ||   ||  | | | | |      | ||        |  | |         ||  ||  | ||| 
ATCAATCAAATAAATGGCAACTGAACATGAAGACGATTTCAAGGATGAGAAGAATCCCCGCCCCCTCGACGAGGATGACATCGCCCTTCTCAAAACCTATgtatgtatcc-tccctttcattccattaccaaattagggtttcttttcaccactctattattggctttcagctctgaattata--tgtaattgaggttctgtt

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA03G42370.3 (Glycine max), 5'ss of exon 1
TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttt--tcgcagtttttgcgtcatttgccgcaaatttgg-acccgcctcgagaac---atttagtgcggcctcgatgtagaatgtgt
             |      | ||   ||  |||||| |     | |||||||| ||   ||| ||||||||||| ||||||||||||||||||||||||||| ||  || |  | ||| ||   |  |    || | ||   ||  | | | | |   |   || |  ||  |   |||   ||       | |   |    || 
----ATCAAATAAATGGCAACTGAACATGAAGACGATTTCAAGGATGAGAAGAATCCCCGCCCCCTCGACGAGGATGACATCGCCCTTCTCAAAACCTATGTATgtatcc-tccctttcattccattaccaaattagggtttcttttcaccactctattattggctttcagctctgaattatatgtaattgaggttctgttgctg-

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 1
TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccca--tgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtagaatgtgt-
  |          |      | ||   ||  |||||| |     | |||||||| ||   ||| ||||||||||| ||||||||||||||||||||||||||| ||   ||     |    || ||  || |   |     | ||   |    |||  |||   ||       ||    |   |     ||   |  | ||| 
ATCGATCAAATAAATGGCTACTGAACATGAAGACGATTTCAAGGATGAGAAGAATCCCCGCCCCCTCGACGAGGATGACATCGCCCTTCTCAAAACCTATgtatgtatgcaaccaacacatctcttttcattccattaccaaattagggtttcttttcaccactcttttagctatcagctcttgt---aattggggttctgtt

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 1
TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtaga-atgtgt-
   |     ||  |        ||    |  ||||||||     | |||||||||||    || ||||||||||| ||||||||||| ||||||||||| ||| |    | |  ||| |     |  | |||     |   |         ||| | ||   |  ||      ||  ||| |     || |    |  ||| 
GAAATAATCGCCAATGGCAATTGAACACGAAGACGATCTCAAAGACGAGAAGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttcct-ccctccgaaaccctaatttcctaattcctcttttttggtttaggccaagca-gatcttggttcttgcaggaattatatctctacttgtg

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 1
TCCAGCTCTGCGCACCA-TGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtagaatgtgt
||  ||  || || |||  ||| ||| | | ||| ||  | |||||||| ||||| ||  | ||||||||||||||||||||||| || ||||| || ||||||||    | || | ||   |||||    |    |||  ||    |  | ||  |   ||  || ||                                
TCACGCCATG-GCGCCAGCGGCAGACGTCGACGATGACATCCTCAAGGAAAAGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTACTCAAGACTTATgtaag-attcgtggcttt---tttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctag--------------------------------

upper sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 1
TCCAGCTCTGCGCACCA-TGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgcccatgtccttccttttcgcagtttttgcgtcatttgccgcaaatttggacccgcctcgagaacatttagtgcggcctcgatgtagaatgtgt
||  ||  || || |||  ||| ||||| | ||| ||| | |||||||| ||||| ||  | ||||||||||||||||||||||| || ||||| || ||||||||    | || | ||   |||||    |    |||  ||    |  | ||  |   ||  || ||                                
TCACGCCATG-GCGCCAGCGGCAGACATCGACGATGATATCCTCAAGGAAAAGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTGCTCAAGACTTATgtaag-attcgtggcttt---tttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67717642|gb|BJ967901.1|BJ967901
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|208348229|gb|DC905485.1|DC905485
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100393232|gb|BY989787.1|BY989787
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|67507498|gb|BJ940380.1|BJ940380
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100442037|gb|BY962930.1|BY962930
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100451078|gb|CJ974586.1|CJ974586
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|18352872|gb|BJ184927.1|BJ184927
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|67704343|gb|BJ964576.1|BJ964576
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|208384192|gb|DC911300.1|DC911300
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100435405|gb|BY979227.1|BY979227
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|18355430|gb|BJ187489.1|BJ187489
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATT
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATT
EST: gi|208375716|gb|DC936656.1|DC936656
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100445251|gb|BY982880.1|BY982880
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|67716993|gb|BJ967252.1|BJ967252
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100441014|gb|BY962502.1|BY962502
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100385842|gb|BY951036.1|BY951036
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|208397607|gb|DC912225.1|DC912225
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|208387130|gb|DC941302.1|DC941302
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100355304|gb|BY965094.1|BY965094
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|67704545|gb|BJ964778.1|BJ964778
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100352668|gb|BY945387.1|BY945387
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|67701869|gb|BJ962102.1|BJ962102
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|18361561|gb|BJ193627.1|BJ193627
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|67719122|gb|BJ969381.1|BJ969381
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100417415|gb|BY957319.1|BY957319
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|100352747|gb|BY945428.1|BY945428
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
EST: gi|67576591|gb|BJ949415.1|BJ949415
EST:     AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTAT                         GGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA
genomic: AGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 13 (upstream exon), 35 (downstream exon)
Score: 4

TCCAGCTCTGCGCACCATGGCGGACATTGCCGACGATCTACTCAAGGAGAAGAACCCGGCCCCGCTCGACGAGGACGACATCGCCCTTCTCAAAACCTATgtaagtgccc ... ggatctgcagGGCTTGGGTCCATATGCAAATCCTATTAAGAAGACCGAAAAAGACATCAAAGAGATGGCTAAGAAGGTCAACGACTTGTGTG




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