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CGCGCAATTTCACCTTCCAATTCGTCCGCTCTCTCACAGGCGGAGGTGGATTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtggttgctcttctcaacttttctgattcccttgattgcgccaatttaccgagttacggtttctcgatcgtttgtggttgatattacgctccat...
species | Physcomitrella patens |
transcript | PP1S49_154V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|100377587|gb|BY986312.1|BY986312
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18351239|gb|BJ183291.1|BJ183291
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18365619|gb|BJ197696.1|BJ197696
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGGGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18372221|gb|BJ203823.1|BJ203823
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18374173|gb|BJ205751.1|BJ205751
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18367708|gb|BJ199791.1|BJ199791
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18362649|gb|BJ194720.1|BJ194720
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|208358694|gb|DC942916.1|DC942916
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18372136|gb|BJ203738.1|BJ203738
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18326303|gb|BJ158302.1|BJ158302
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18327256|gb|BJ159258.1|BJ159258
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18343443|gb|BJ175481.1|BJ175481
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18370151|gb|BJ201753.1|BJ201753
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18364496|gb|BJ196569.1|BJ196569
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18373951|gb|BJ205529.1|BJ205529
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCANACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18366250|gb|BJ198328.1|BJ198328
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGGEST: gi|18373779|gb|BJ205357.1|BJ205357
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
EST: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCG ATACTGGGGTGCTCANACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
genomic: TTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtgg ... tgttggtcagATACTGGGGTGCTCAGACTCAAAGATCTGTACAGAATTTTGAGATTGGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCAATTTCACCTTCCAATTCGTCCGCTCTCTCACAGGCGGAGGTGGATTCAGGGAGGAGCGTGACACCTTTGGCCTCATTCAAGTCCCCAATGACCGgtgcgtgtggttgctcttctcaacttttctgattcccttgattgcgccaatttaccgagttacggtttctcgatcgtttgtggttgatattacgctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG