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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCTGGGATGCGTGCTAATCTGGAAATAGCAGCACTGCATTCTATTGGTGAAGgtgggttctgttgggtggcttcaatatttgcagctctgaggttgtcacctttgacaagggtcgtaatttctatatgaagccgggttgcttggtttgctaa...

Basic information

species Physcomitrella patens
transcript PP1S49_102V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346664|gb|BJ178709.1|BJ178709
EST:     TGGGATGCGTGCTAATCTGGAAATAGCAGCACTGCATTCTATTGGTGAAG                         TGGAGACAATGATACGGGGAGGGTTTTGGAGGCGGGTGGCGATCGCGAGGA
genomic: TGGGATGCGTGCTAATCTGGAAATAGCAGCACTGCATTCTATTGGTGAAGgtgggttctg ... gggtttgcagTGGAGACAATGATACGGGGAGGGTTTTGGAGGCGGGTGGCGATCGCGAGGA
EST: gi|100403508|gb|BY991235.1|BY991235
EST:     AAATAGCAGCACTGCATTCTATTGGTGAAG                         TGGAGACAATGATACGGGGAGGGTTTTGGAGGCGGGTGGCGATCGCGAGGA
genomic: AAATAGCAGCACTGCATTCTATTGGTGAAGgtgggttctg ... gggtttgcagTGGAGACAATGATACGGGGAGGGTTTTGGAGGCGGGTGGCGATCGCGAGGA