Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100440620|gb|BY962307.1|BY962307EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGG AAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
EST:
gi|18375321|gb|BJ206899.1|BJ206899EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGG AAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
EST:
gi|18327556|gb|BJ159559.1|BJ159559EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGG AAATTTGAAGAGGTGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
EST:
gi|18371471|gb|BJ203073.1|BJ203073EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGG AAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
EST:
gi|100408025|gb|BY955876.1|BY955876EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGG AAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
EST:
gi|18357107|gb|BJ189166.1|BJ189166EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGG AAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
EST:
gi|100397422|gb|BY972491.1|BY972491EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGCGTCCGCAAACTCTGG AAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
EST:
gi|18371775|gb|BJ203377.1|BJ203377EST: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGG AAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
genomic: AATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagac ... ctgtttgcagAAATTTGAAGAGATGAATTGGCGTTAGTGGTGATTGTTCGTCATCACCGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTGTCAGACGTCGTGAATTGCTATGAGTTTGCTAATGTTCGTTGCCAGAATTGGTGGAAGACGAGTTCTAGGGTTTTTCATGTGTCCGCAAACTCTGGgtaggcagactgacggcctctcttcaaccgaggaatcatgtgggcgttggatgtggcgcccaacttctgcttagaactggacttagttctgcactttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA