1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGATGGATGGGTTTTTCAACGCCTTCAAGAGCTCGGGACTTGTGAAAGTGGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtattgggcgatccatttttccacatttgtatcggaagggtagtttcgcgtttgttgcggtttcttttcttcgatggagttggggtttgatgttt...
species | Physcomitrella patens |
transcript | PP1S48_255V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|100430336|gb|BY959818.1|BY959818
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|100393024|gb|BY989722.1|BY989722
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|100387330|gb|BY970474.1|BY970474
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|18345213|gb|BJ177254.1|BJ177254
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|18353041|gb|BJ185096.1|BJ185096
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|100352954|gb|BY945533.1|BY945533
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|18370450|gb|BJ202052.1|BJ202052
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|100363827|gb|BY966190.1|BY966190
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|162186349|gb|FC361657.1|FC361657
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|18327173|gb|BJ159175.1|BJ159175
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|18331214|gb|BJ163223.1|BJ163223
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|18352328|gb|BJ184382.1|BJ184382
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|67570257|gb|BJ943081.1|BJ943081
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|208361526|gb|DC942811.1|DC942811
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAG TAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATTEST: gi|100435075|gb|BY979061.1|BY979061
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGATT
EST: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGGAAG TAGGGAATGTTGACTCCAAGTCACGTTCCTACGATTCTTCCTCCACGGA
genomic: GGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtatt ... tgttgtgcagTAGGGAATGTTGACTCAAAGTCACGTTCCTACGATTCTTCCTCCACGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATGGATGGGTTTTTCAACGCCTTCAAGAGCTCGGGACTTGTGAAAGTGGTGCAGGATGTGGCTGAGGATGCTCTTCACGTGAACCGTGACGGGAAAGgtagtgtattgggcgatccatttttccacatttgtatcggaagggtagtttcgcgtttgttgcggtttcttttcttcgatggagttggggtttgatgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG