1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAAGACGGTGAAGCATTCGAGCTTATGCGAGGAGTGACGGCGGAGGATGTCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTTgtacgttttcttaactgcatgtattgcgtgttccctcctccatagttttagctaatttgatttgtgcactcaattgcggaagttctgcatctggtcctgc...
species | Physcomitrella patens |
transcript | PP1S48_250V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTT GTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATGEST: gi|162256707|gb|FC433225.1|FC433225
genomic: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTTgtacgttttc ... attgatgcagGTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATG
EST: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTT GTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATGEST: gi|18328101|gb|BJ160105.1|BJ160105
genomic: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTTgtacgttttc ... attgatgcagGTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATG
EST: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTT GTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATGEST: gi|100403065|gb|BY973489.1|BY973489
genomic: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTTgtacgttttc ... attgatgcagGTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATG
EST: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTT GTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATGEST: gi|18344379|gb|BJ176419.1|BJ176419
genomic: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTTgtacgttttc ... attgatgcagGTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATG
EST: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTT GTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATG
genomic: TCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTTgtacgttttc ... attgatgcagGTAGCTGCTTCTCTGGAGGTTTTGGTAAGACCCGTGGTATTGAAGACTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGACGGTGAAGCATTCGAGCTTATGCGAGGAGTGACGGCGGAGGATGTCGCGAGGTTTTACGAAGCGAACGCTTCAGATGAGGGAGTAGCTGAAGTTgtacgttttcttaactgcatgtattgcgtgttccctcctccatagttttagctaatttgatttgtgcactcaattgcggaagttctgcatctggtcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG