Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGGGGAAGATCGTAGCATTGAAGTGTCGGCTTGATCTAGCTAGAACCAGGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatatttgggtcgtatgatctggttcacgtttgttgtgcatgtagctgggttttgagatcgttggggagggtcaattttaagagaggttaggagg...

Basic information

species Physcomitrella patens
transcript PP1S48_203V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100359384|gb|BY965720.1|BY965720
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|100439351|gb|BY980220.1|BY980220
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|100383854|gb|BY987111.1|BY987111
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|100413133|gb|BY992603.1|BY992603
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|100355976|gb|BY946132.1|BY946132
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|18362950|gb|BJ195022.1|BJ195022
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|18330210|gb|BJ162216.1|BJ162216
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|208373478|gb|DC941075.1|DC941075
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGCTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|18328880|gb|BJ160886.1|BJ160886
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|208384905|gb|DC903412.1|DC903412
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|100417698|gb|BY975610.1|BY975610
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
EST: gi|100418558|gb|BY957478.1|BY957478
EST:     GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAG                         GTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG
genomic: GGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 25 (downstream exon)
Score: 6

ACGGGGGAAGATCGTAGCATTGAAGTGTCGGCTTGATCTAGCTAGAACCAGGTGTTCTGGGTAGCTAATTCTCTGCCGATTTTCTTCTTTGGTTTACAAGgtgaggatat ... tttgcaacagGTACCTCTACTTGCGTTGGGCACTGGTTGAACTTTATAGCTTCTTTGGAAGACGTCGAGTTAGTCGTGCTTCAAGCCTTTCATTGCAAATGAGTCTGACC




<











<


<