Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18363196|gb|BJ195268.1|BJ195268EST: CCTCCGGAGCTGCGGGTAANNNNNNNCACCGGAGCTTTCCAAGATCGGAG TGGCATGGATTTCACTCGAGAGAGGGGATAATGAAGAAGAAGTTGTGAAGG
genomic: CCTCCGGAGCTGCGGGTAA-TTTTTTCACCGGAGCTTTCCAAGATCGGAGgtatgtttcg ... atctttgcagTGGCATGGATTTCACTCGAGAGAGGGGATAATGAAGAAGAAGTTGTGAAGG
EST:
gi|67718559|gb|BJ968818.1|BJ968818EST: AATTTTTTCACCGGAGCTTTCCAAGATCGGAG TGGCATGGATTTCACTCGAGAGAGGGGATAATGAAGAAGAAGTTGTGAAGG
genomic: AATTTTTTCACCGGAGCTTTCCAAGATCGGAGgtatgtttcg ... atctttgcagTGGCATGGATTTCACTCGAGAGAGGGGATAATGAAGAAGAAGTTGTGAAGG
EST:
gi|18352828|gb|BJ184883.1|BJ184883EST: GCCTCCGGAGCTGCGGGTAATTTTTTCACCGGAGCTTTCCAAGATCGGAG TGGCATGGATTTCACTCNAGAGAGGGGATAATGAAGAAGAAGTTGTGAAGG
genomic: GCCTCCGGAGCTGCGGGTAATTTTTTCACCGGAGCTTTCCAAGATCGGAGgtatgtttcg ... atctttgcagTGGCATGGATTTCACTCGAGAGAGGGGATAATGAAGAAGAAGTTGTGAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTCTCGCTTTGTTTGCACTAAGGGTCCCGCCTCCGGAGCTGCGGGTAATTTTTTCACCGGAGCTTTCCAAGATCGGAGgtatgtttcgcagcctcgtcgcgaaaatctgttgagggaaattctgtgcggaagaatttgccaactatgtttgtttcagtactttaagcgacagaattca
- - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT