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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTACGAAGCTTACCGCTCTTCGGGGGTGCTGGCGGGTTGTTTGCGGTGCTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAGgtacgtagaatcagtgtccatccctccgttcacttaatttgcagaagtttgcctcgttcttttatttctatctaaagaagtagctctcaaacggagcgtg...

Basic information

species Physcomitrella patens
transcript PP1S47_78V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100385731|gb|BY987796.1|BY987796
EST:     CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAG                         TGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
genomic: CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAGgtacgtagaa ... cgggagacagTGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
EST: gi|208387521|gb|DC933384.1|DC933384
EST:     CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAG                         TGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
genomic: CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAGgtacgtagaa ... cgggagacagTGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
EST: gi|100414748|gb|BY956844.1|BY956844
EST:     CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAG                         TGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
genomic: CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAGgtacgtagaa ... cgggagacagTGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
EST: gi|18347355|gb|BJ179401.1|BJ179401
EST:     CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAG                         TGCACAGTCAAGGTCCGATGTGTTGGCCCTCNCGTTGGCANCCACAGTGTT
genomic: CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAGgtacgtagaa ... cgggagacagTGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
EST: gi|18350151|gb|BJ182202.1|BJ182202
EST:     CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAG                         TGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT
genomic: CTTCTCAACCGGAGTTTATCAGGAATCGCTCCTGTTGCCGATTCAAGCAGgtacgtagaa ... cgggagacagTGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTT