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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCTTTTCGCCCTCGAGCTGGGCAATCAGTGTTCCGCTAACACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactcactttctcctttcctgtcccaaaattatgctttgttattgaatatgtgcgctgcgttgtggtgctggtttgaaccaggactgaaacctaattccggccacatttggattgaggaaatgagacaatttgtttgcgtatgcag

Basic information

species Physcomitrella patens
transcript PP1S47_42V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6102252|gb|AW126722.1|AW126722
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|7067374|gb|AW497229.1|AW497229
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162227580|gb|FC403522.1|FC403522
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67702997|gb|BJ963230.1|BJ963230
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|7147695|gb|AW509666.1|AW509666
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162227187|gb|FC403844.1|FC403844
EST:     CCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: CCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162221336|gb|FC398120.1|FC398120
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162233580|gb|FC410962.1|FC410962
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67701344|gb|BJ961577.1|BJ961577
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67724173|gb|BJ974432.1|BJ974432
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162264291|gb|FC441393.1|FC441393
EST:     CATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: CATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162277884|gb|FC454347.1|FC454347
EST:     -CCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162215437|gb|FC391933.1|FC391933
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162232848|gb|FC407501.1|FC407501
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|19790792|gb|BQ042057.1|BQ042057
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67726407|gb|BJ976666.1|BJ976666
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|7067085|gb|AW496940.1|AW496940
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|208348761|gb|DC909796.1|DC909796
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162239764|gb|FC417163.1|FC417163
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67578444|gb|BJ950611.1|BJ950611
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|19783351|gb|BQ039997.1|BQ039997
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|7067375|gb|AW497230.1|AW497230
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|208385042|gb|DC911330.1|DC911330
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162259872|gb|FC436007.1|FC436007
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162248361|gb|FC419755.1|FC419755
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67577697|gb|BJ949864.1|BJ949864
EST:     TTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCANGAAAAGAACCTTTAAG
genomic: TTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67717901|gb|BJ968160.1|BJ968160
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162235948|gb|FC411691.1|FC411691
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67704304|gb|BJ964537.1|BJ964537
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162277883|gb|FC454346.1|FC454346
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67710246|gb|BJ965909.1|BJ965909
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|7207481|gb|AW561482.1|AW561482
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162199029|gb|FC372380.1|FC372380
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162227581|gb|FC403523.1|FC403523
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|208400853|gb|DC925133.1|DC925133
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162225347|gb|FC401164.1|FC401164
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162218517|gb|FC395094.1|FC395094
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162261488|gb|FC438324.1|FC438324
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67717312|gb|BJ967571.1|BJ967571
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162264292|gb|FC441394.1|FC441394
EST:     CATTCTTC-CCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: CATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162227186|gb|FC403843.1|FC403843
EST:     CCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: CCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|162259873|gb|FC436008.1|FC436008
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|7147889|gb|AW509811.1|AW509811
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
EST: gi|67725829|gb|BJ976088.1|BJ976088
EST:     ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATG                         GCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG
genomic: ACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 196

AGCTCCTTTTCGCCCTCGAGCTGGGCAATCAGTGTTCCGCTAACACCAGCCGCTGCGTCGAACTCGCACTTGTTTCACTGCATTCTTCACCATGgtactactca ... gcgtatgcagGCGGACGCTGCAGAAGTTGAGATTGCTCAACCCAAGAAAAGAACCTTTAAGAAGTTTACTTTCCGCGGCGTCGATCTCGATGCTCTCCTCGACATGAGCA




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