1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTGAGGGTGGTCATTTCTCTGGCTCTCGTTTTTTGCCTTTGTGCTTCCTCTGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGTTGCTgtgagttttcacttccctctctctgtgcgaaaattgtctggtttaaagctttggtggaattttgcgcgttttttttatttttattgtttgttacgtggac...
species | Physcomitrella patens |
transcript | PP1S47_245V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGNTGCT TTGGAGCTGGAGGACTCGCTTGCAAATEST: gi|18366115|gb|BJ198193.1|BJ198193
genomic: TGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGTTGCTgtgagttttc ... tatgtggcagTTGGAGCTGGAGGACTCGCTTGCAAAT
EST: CTGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGTTGCT TTGGAGCTGGAGGACTCGCTTGCAAATEST: gi|162259549|gb|FC435476.1|FC435476
genomic: CTGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGTTGCTgtgagttttc ... tatgtggcagTTGGAGCTGGAGGACTCGCTTGCAAAT
EST: CTGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGTTGCT TTGGAGCTGGAGGACTCGCTTGCAAAT
genomic: CTGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGTTGCTgtgagttttc ... tatgtggcagTTGGAGCTGGAGGACTCGCTTGCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGGGTGGTCATTTCTCTGGCTCTCGTTTTTTGCCTTTGTGCTTCCTCTGCTTTAGCCATAGTGGACGATAAATGCTCCGCTTGCAAAGCTGTTGCTgtgagttttcacttccctctctctgtgcgaaaattgtctggtttaaagctttggtggaattttgcgcgttttttttatttttattgtttgttacgtggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT