1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CATCTGGTTCCTTCTCCCACGCTAATCTCGCCGTTTTGTTGTTGTTGCTGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcgtaccccgcggattcgctgccagtgtctcacccttagctctgttctgattccgtaattagagatcgcgggagcgtttagccatttcgctgc...
species | Physcomitrella patens |
transcript | PP1S47_18V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAG ATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGCEST: gi|18355442|gb|BJ187501.1|BJ187501
genomic: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcg ... gtttatctagATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGC
EST: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAG ATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGCEST: gi|18325007|gb|BJ157003.1|BJ157003
genomic: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcg ... gtttatctagATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGC
EST: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAG ATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGCEST: gi|18344020|gb|BJ176059.1|BJ176059
genomic: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcg ... gtttatctagATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGC
EST: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAG ATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGCEST: gi|18355737|gb|BJ187796.1|BJ187796
genomic: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcg ... gtttatctagATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGC
EST: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAG ATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGCEST: gi|18373250|gb|BJ204852.1|BJ204852
genomic: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcg ... gtttatctagATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGC
EST: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAG ATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGC
genomic: TGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcg ... gtttatctagATTTGAAGGGTTTCAGTGGAATCGGACGAGGAAGGGAGAAGAAGGTAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCTGGTTCCTTCTCCCACGCTAATCTCGCCGTTTTGTTGTTGTTGCTGCTGCTGCTCCGGGTAGCAGGCTGCCTCAGCTCTTCGGTTGTCTCCAAGgttcgtgtcgtaccccgcggattcgctgccagtgtctcacccttagctctgttctgattccgtaattagagatcgcgggagcgtttagccatttcgctgc
- - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC