1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ATGGTGACCCATCGAAGGGACATGTCTATAGAAGCTTGTTTGCAAAAGATGGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctttcacttcacaatactttagttttccattctttcgaagtgatcctcctgctgacaatactgctcatcattatgcacaatttttgtttttac...
species | Physcomitrella patens |
transcript | PP1S47_161V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGA GCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGATEST: gi|162149873|gb|FC326196.1|FC326196
genomic: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctt ... attatttcagGCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGAT
EST: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGA GCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGATEST: gi|67569282|gb|BJ942106.1|BJ942106
genomic: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctt ... attatttcagGCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGAT
EST: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGA GCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGATEST: gi|162197005|gb|FC375217.1|FC375217
genomic: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctt ... attatttcagGCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGAT
EST: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGA GCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGATEST: gi|100446126|gb|CJ970425.1|CJ970425
genomic: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctt ... attatttcagGCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGAT
EST: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGA GCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGATEST: gi|100385114|gb|BY987577.1|BY987577
genomic: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctt ... attatttcagGCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGAT
EST: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGA GCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGAT
genomic: GGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctt ... attatttcagGCGATCCAAAGTCAAAGGTCCTGGCAATAACATGCTCGGAGTTCGTGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGTGACCCATCGAAGGGACATGTCTATAGAAGCTTGTTTGCAAAAGATGGCTTCCCCCCTCTTCCTGAAGGAATTTCTACGTGCTGGGATATTTTCGAgtacgttctttcacttcacaatactttagttttccattctttcgaagtgatcctcctgctgacaatactgctcatcattatgcacaatttttgtttttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA