1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAGCGACGGGTGCCTTACAGTCGGAGTTCAACAAACGAGCGTCGCAGATCGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaatttgtaaggcagcttaatgttggacggcaggatggtgtttgtaagatctggtgtattttgagatatttatgggaattgtgtgctttctgaa...
species | Physcomitrella patens |
transcript | PP1S47_13V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|100427896|gb|BY959180.1|BY959180
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|18362038|gb|BJ194105.1|BJ194105
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCCGGCAGTTGAAATTCAGGAGEST: gi|162228050|gb|FC404631.1|FC404631
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCC-GGCAGTTGAAATTCAGGAG
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|100448172|gb|CJ972471.1|CJ972471
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|67718132|gb|BJ968391.1|BJ968391
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|100352908|gb|BY945510.1|BY945510
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|18353040|gb|BJ185095.1|BJ185095
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAEST: gi|100389604|gb|BY952410.1|BY952410
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCA
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|208384936|gb|DC903443.1|DC903443
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAGATTCAGGAGCEST: gi|67709917|gb|BJ965733.1|BJ965733
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGCEST: gi|67572842|gb|BJ945666.1|BJ945666
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
EST: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAAT TGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
genomic: CGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaat ... tgttgtacagTGGCAAAGCGAACATCTATGTTCGATGATCCGGCAGTTGAAATTCAGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCGACGGGTGCCTTACAGTCGGAGTTCAACAAACGAGCGTCGCAGATCGGGCTTAGCATTCATCAGACCTCGCAGAAGCTCTCCAAGTTAGCCAAATgtgagttaatttgtaaggcagcttaatgttggacggcaggatggtgtttgtaagatctggtgtattttgagatatttatgggaattgtgtgctttctgaa
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