Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGACCGGATCCAACAACGAGTCCTGGTGCCAAGGTTTGGATGGATTGGCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacactcggtgaccattcccagtgagcttttgtgttaggtcttctaggttcatatgttcaatttctgacgcaatttatattccag

Basic information

species Physcomitrella patens
transcript PP1S475_27V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158725|gb|FC335573.1|FC335573
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|67726690|gb|BJ976949.1|BJ976949
EST:     GCCTCGAGGACTGCTGCTTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162194179|gb|FC369691.1|FC369691
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162248277|gb|FC420880.1|FC420880
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162237347|gb|FC413898.1|FC413898
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|19784433|gb|BQ040173.1|BQ040173
EST:     CTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: CTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208373404|gb|DC931863.1|DC931863
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162202540|gb|FC378729.1|FC378729
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162233061|gb|FC408468.1|FC408468
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208375895|gb|DC926987.1|DC926987
EST:     GCCTCGAGGACTGCTGCNTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162213869|gb|FC389860.1|FC389860
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162228866|gb|FC405010.1|FC405010
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162246465|gb|FC421106.1|FC421106
EST:     TTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: TTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208381428|gb|DC927864.1|DC927864
EST:     GCCTCGAGGACTGCTGCNTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162160401|gb|FC337402.1|FC337402
EST:     GGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162177545|gb|FC352403.1|FC352403
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208385926|gb|DC956764.1|DC956764
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162258017|gb|FC434111.1|FC434111
EST:     GCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208396426|gb|DC915556.1|DC915556
EST:     AGCA-GGCG-CCGA-TCGCCNAG-G                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGNTGGCCGTCACTGA
genomic: AGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208385708|gb|DC952869.1|DC952869
EST:     CTGCTGCCTA-TNCAAGCAGGGCG-CCGA-TCGCCNAG-G                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGNTGGCCGTCACTGA
genomic: CTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208398721|gb|DC916244.1|DC916244
EST:     TACAAGCA-GGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: TACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208373378|gb|DC956482.1|DC956482
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162179183|gb|FC355648.1|FC355648
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162150715|gb|FC327611.1|FC327611
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|67726614|gb|BJ976873.1|BJ976873
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162159413|gb|FC335188.1|FC335188
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162239016|gb|FC418469.1|FC418469
EST:     CCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: CCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162160085|gb|FC335955.1|FC335955
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162191262|gb|FC366836.1|FC366836
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|18331153|gb|BJ163160.1|BJ163160
EST:     CTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: CTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208381391|gb|DC927827.1|DC927827
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|67727238|gb|BJ977497.1|BJ977497
EST:     ACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: ACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162164867|gb|FC340537.1|FC340537
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208366905|gb|DC951392.1|DC951392
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162195100|gb|FC371375.1|FC371375
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162217260|gb|FC392000.1|FC392000
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162214655|gb|FC390686.1|FC390686
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162219146|gb|FC394729.1|FC394729
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162216426|gb|FC393259.1|FC393259
EST:     AAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: AAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162170904|gb|FC346595.1|FC346595
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|67726280|gb|BJ976539.1|BJ976539
EST:     TTCGCCAAG-G                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: TTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162157454|gb|FC333517.1|FC333517
EST:     CTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: CTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162229592|gb|FC405900.1|FC405900
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208363397|gb|DC946995.1|DC946995
EST:     TACAAGCAGGGCG-CCGATTCGCCNAG-G                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGNTGGCCGTCACTGA
genomic: TACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162168628|gb|FC343890.1|FC343890
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208383786|gb|DC928075.1|DC928075
EST:     GCCTCGAGGACTGCTGCNTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162216427|gb|FC393260.1|FC393260
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162174146|gb|FC350349.1|FC350349
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162213591|gb|FC389463.1|FC389463
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162192603|gb|FC370650.1|FC370650
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162202018|gb|FC377224.1|FC377224
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162177100|gb|FC353153.1|FC353153
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162180492|gb|FC356134.1|FC356134
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162155292|gb|FC331736.1|FC331736
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162199517|gb|FC374105.1|FC374105
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208356119|gb|DC918401.1|DC918401
EST:     AGCAGGGCGCCCG-NTCGCCNAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTT-GCCGTCACTGA
genomic: AGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162221962|gb|FC398230.1|FC398230
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162154636|gb|FC331574.1|FC331574
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162169387|gb|FC345743.1|FC345743
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162171018|gb|FC346917.1|FC346917
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208347355|gb|DC917202.1|DC917202
EST:     TTCGCCAAG-G                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: TTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162153787|gb|FC329918.1|FC329918
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162165679|gb|FC342246.1|FC342246
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162192806|gb|FC370151.1|FC370151
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162191371|gb|FC367127.1|FC367127
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162183487|gb|FC358779.1|FC358779
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162161754|gb|FC337895.1|FC337895
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|208345297|gb|DC917264.1|DC917264
EST:     AGCAGGGCGCCCG-NTCGCCNAGTG                         GAGGACTGTTGTGAGCATCCCCAACNGACCCTCGGAGTTGGCCGTCACTGA
genomic: AGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162182928|gb|FC359805.1|FC359805
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162197718|gb|FC374968.1|FC374968
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162192517|gb|FC368627.1|FC368627
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
EST: gi|162241573|gb|FC414695.1|FC414695
EST:     GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTG                         GAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA
genomic: GCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 435

CTTTGACCGGATCCAACAACGAGTCCTGGTGCCAAGGTTTGGATGGATTGGCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacac ... tatattccagGAGGACTGTTGTGAGCATCCCCAACGGACCCTCGGAGTTGGCCGTCACTGAAGCTGCCTGGGGCCTTGCTCGGTACGCCTCCATCTGCCAGGACAATGGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGACCGGATCCAACAACGAGTCCTGGTGCCAAGGTTTGGATGGATTGGCCTCGAGGACTGCTGCCTACTACAAGCAGGGCGCCCGATTCGCCAAGTGgtgagtacactcggtgaccattcccagtgagcttttgtgttaggtcttctaggttcatatgttcaatttctgacgcaatttatattccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC