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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGACGCCAAGCCCCTGCTCTTGAGTAGATATTGCTACACGCATATTCTACAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAGgtgcgttactcagtgtgtctactcttatcgttatactctgttccatgcccttttccaaggaaatgaaaacacctcgttctatttccggggcttatggctactgaacattcaatttaggaagcttcaaccattgtaaaccctgccgtgaatgctacatctcgtcgcattgctgcag

Basic information

species Physcomitrella patens
transcript PP1S471_22V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376924|gb|DC936758.1|DC936758
EST:     CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAG                         GGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
genomic: CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAGgtgcgttact ... attgctgcagGGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
EST: gi|208364684|gb|DC954442.1|DC954442
EST:     CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAG                         GGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
genomic: CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAGgtgcgttact ... attgctgcagGGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
EST: gi|100385232|gb|BY950824.1|BY950824
EST:     CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAG                         GGGTAGCGAAAA
genomic: CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAGgtgcgttact ... attgctgcagGGGTAGCGAAAA
EST: gi|208355562|gb|DC906570.1|DC906570
EST:     CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAG                         GGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
genomic: CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAGgtgcgttact ... attgctgcagGGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
EST: gi|208396908|gb|DC920448.1|DC920448
EST:     CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAG                         GGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
genomic: CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAGgtgcgttact ... attgctgcagGGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
EST: gi|37835049|gb|BJ593061.1|BJ593061
EST:     CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAG                         GGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA
genomic: CAGGAGCCTCGTCAACGCTTGTACAAGCCGTGCTCCTTCACTGTCCGCAGgtgcgttact ... attgctgcagGGGTAGCGAAAAGAATGGCAGCGGGATTTTGTGCCAGAAACCCGTACTTCA