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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGGGTTTGGTGTAGGGTTTGTTTCTATGCTTGGATCGCTGGTTCAGCCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttttgtcgcctctgaaacttgtgctgtagcagtgtgccttgtagcagtcgtgtatgggcgtaataatgagtacttttaaggtttgggttggtt...

Basic information

species Physcomitrella patens
transcript PP1S46_64V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18364226|gb|BJ196299.1|BJ196299
EST:     CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAG                         GCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
genomic: CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttt ... ttctttgcagGCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
EST: gi|100388749|gb|BY970897.1|BY970897
EST:     CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAG                         GCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
genomic: CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttt ... ttctttgcagGCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
EST: gi|208353889|gb|DC942787.1|DC942787
EST:     CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAG                         GCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
genomic: CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttt ... ttctttgcagGCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
EST: gi|208356778|gb|DC906440.1|DC906440
EST:     CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAG                         GCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
genomic: CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttt ... ttctttgcagGCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
EST: gi|18354047|gb|BJ186102.1|BJ186102
EST:     CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAG                         GCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
genomic: CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttt ... ttctttgcagGCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
EST: gi|18325412|gb|BJ157408.1|BJ157408
EST:     CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAG                         GCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
genomic: CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttt ... ttctttgcagGCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
EST: gi|162189180|gb|FC365987.1|FC365987
EST:     CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAG                         GCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG
genomic: CCCCTCGTGATCATCAATTCTTCTGCGCTGTAGCAATGTTTCTGCGGCAGgtttgcgttt ... ttctttgcagGCATACAAGACTGCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGG