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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGGCCCTGGTCACTGGCATAGATCCACTCCTGTTTACCTTCTACAGGAATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatggtgtatagttacacccatgaatctactaactactgagaaatcaccgatgctttttacaattgtgcaatttgcactttaagggaacgaatttcagggtctgacttgttcgttggctttcgtcagcag

Basic information

species Physcomitrella patens
transcript PP1S46_43V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18350799|gb|BJ182850.1|BJ182850
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100413311|gb|BY956609.1|BY956609
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCCTCA-TATTC
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACC-TCAATATTC
EST: gi|208390540|gb|DC937472.1|DC937472
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCNAGAG                         GGATATGAGACCGAAAATGACTCTANCGACGTT-GGNAACCTCA-TATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100421359|gb|BY976168.1|BY976168
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTNGCGAC
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGAC
EST: gi|100402583|gb|BY954908.1|BY954908
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGGAAATGACTCTNGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|18357975|gb|BJ190034.1|BJ190034
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCNAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCA
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCA
EST: gi|208383042|gb|DC915314.1|DC915314
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAA-CCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|18351818|gb|BJ183870.1|BJ183870
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTG
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTG