1 5' 3' | 2 5' 3' | 3 5' 3' |
CACTCTCGTTTACATTCCCTGCGTTGCGTTGCTTGCCCGTTATTCCTTCATTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttctctttctttctcttggtttctcttgcatctctgtcctgttgattggtcccatttttgagctggtaacaggggctgtgactattgtcttgct...
species | Physcomitrella patens |
transcript | PP1S46_326V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162265952|gb|FC442955.1|FC442955
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162259016|gb|FC435127.1|FC435127
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|208381670|gb|DC915536.1|DC915536
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162259138|gb|FC436432.1|FC436432
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|208367972|gb|DC950997.1|DC950997
genomic: TGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162269068|gb|FC444936.1|FC444936
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162264590|gb|FC440886.1|FC440886
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|67576061|gb|BJ948885.1|BJ948885
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162229199|gb|FC404558.1|FC404558
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162259211|gb|FC436466.1|FC436466
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|67569310|gb|BJ942134.1|BJ942134
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: ACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|208395552|gb|DC928967.1|DC928967
genomic: ACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162259139|gb|FC436433.1|FC436433
genomic: TCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162276798|gb|FC452792.1|FC452792
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: CGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTTTGTGAACACCCCCCAGEST: gi|162226856|gb|FC403044.1|FC403044
genomic: CGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: CTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|208391705|gb|DC937937.1|DC937937
genomic: CTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|19784287|gb|BQ040153.1|BQ040153
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162271484|gb|FC446433.1|FC446433
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|208384616|gb|DC915219.1|DC915219
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162276799|gb|FC452793.1|FC452793
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162229198|gb|FC404557.1|FC404557
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: CTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162259212|gb|FC436467.1|FC436467
genomic: CTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162276680|gb|FC452258.1|FC452258
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|67692570|gb|BJ952803.1|BJ952803
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162271530|gb|FC446479.1|FC446479
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162245700|gb|FC419600.1|FC419600
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162226857|gb|FC403045.1|FC403045
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: CTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162259912|gb|FC436047.1|FC436047
genomic: CTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162280258|gb|FC456275.1|FC456275
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162262668|gb|FC438463.1|FC438463
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162262669|gb|FC438464.1|FC438464
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|162259370|gb|FC436235.1|FC436235
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATEST: gi|208352185|gb|DC901706.1|DC901706
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTCTCGTTTACATTCCCTGCGTTGCGTTGCTTGCCCGTTATTCCTTCATTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttctctttctttctcttggtttctcttgcatctctgtcctgttgattggtcccatttttgagctggtaacaggggctgtgactattgtcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG