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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGTTGTTGCAGCTGATTGAATGTTTTTGTCTGTGCAGCGCATCCCAGACCAATACCAACTTTGAGGCTTGTGCGAGgtctgtaacttactcgaggctggtgttgtagtgggttcctctttcgttttgtgtgctgtatgtttcgtctctctctgtgcttgtgacttggattcctttg...

Basic information

species Physcomitrella patens
transcript PP1S46_325V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100415244|gb|BY975222.1|BY975222
EST:     TGTCTGTGCAGCGCATCCCAGACCAATACCAACTTTGAGGCTTGTGCGAG                         ACTGGTGCAACAAGGCGAAGGATTCAAAGGACGTGGAGCTATGGGAATCAA
genomic: TGTCTGTGCAGCGCATCCCAGACCAATACCAACTTTGAGGCTTGTGCGAGgtctgtaact ... taagccacagACTGGTGCAACAAGGCGAAGGATTCAAAGGACGTGGAGCTATGGGAATCAA
EST: gi|18353097|gb|BJ185152.1|BJ185152
EST:     TGTCTGTGCAGCGCATCCCAGACCAATACCAACTTTGAGGCTTGTGCGAG                         ACTGGTGCAACAAGGCGAAGGATTCAAAGGACGTGGAGCTATGGGAATCAA
genomic: TGTCTGTGCAGCGCATCCCAGACCAATACCAACTTTGAGGCTTGTGCGAGgtctgtaact ... taagccacagACTGGTGCAACAAGGCGAAGGATTCAAAGGACGTGGAGCTATGGGAATCAA