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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGGGTTTGGAGCTCTAAGACCATGGTCTGTTGCGTCAATCTCTCTTTCACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccag

Basic information

species Physcomitrella patens
transcript PP1S459_9V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265436|gb|FC440762.1|FC440762
EST:     ATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: ATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|162229259|gb|FC405346.1|FC405346
EST:     GCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: GCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|162215362|gb|FC391858.1|FC391858
EST:     CTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18370466|gb|BJ202068.1|BJ202068
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18326513|gb|BJ158512.1|BJ158512
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208356746|gb|DC906408.1|DC906408
EST:     ACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: ACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18326626|gb|BJ158625.1|BJ158625
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18326583|gb|BJ158582.1|BJ158582
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18373736|gb|BJ205314.1|BJ205314
EST:     AGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         AATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGA
genomic: AGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... gtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGA
EST: gi|162204085|gb|FC379454.1|FC379454
EST:     TGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: TGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|67719664|gb|BJ969923.1|BJ969923
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18368398|gb|BJ200483.1|BJ200483
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|67573107|gb|BJ945931.1|BJ945931
EST:     GCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: GCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18352513|gb|BJ184567.1|BJ184567
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18360219|gb|BJ192281.1|BJ192281
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18327983|gb|BJ159987.1|BJ159987
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208347049|gb|DC909347.1|DC909347
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208382584|gb|DC923212.1|DC923212
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|162272675|gb|FC448301.1|FC448301
EST:     TGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: TGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208391982|gb|DC941830.1|DC941830
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg