Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTCGCTCGCACGCCCTCCCGGTTGCAAGCTCTCGCTAGGTCGCGCCCTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgtagccattgttccccgctcatttttgccaatgggttgggatttttttgcttattattctgttttttcatgagcag

Basic information

species Physcomitrella patens
transcript PP1S454_3V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18366824|gb|BJ198904.1|BJ198904
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18349939|gb|BJ181990.1|BJ181990
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18364872|gb|BJ196945.1|BJ196945
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18361517|gb|BJ193583.1|BJ193583
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18355674|gb|BJ187733.1|BJ187733
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162239612|gb|FC416868.1|FC416868
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|67703308|gb|BJ963541.1|BJ963541
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|19790024|gb|BQ041654.1|BQ041654
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|67704629|gb|BJ964862.1|BJ964862
EST:     TTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGGGCTGAACGAGCTTCTCACCCGG
genomic: TTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18328399|gb|BJ160404.1|BJ160404
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18348535|gb|BJ180584.1|BJ180584
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18362282|gb|BJ194352.1|BJ194352
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18366022|gb|BJ198100.1|BJ198100
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|67703786|gb|BJ964019.1|BJ964019
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18346604|gb|BJ178649.1|BJ178649
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18362603|gb|BJ194674.1|BJ194674
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18361780|gb|BJ193847.1|BJ193847
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18366162|gb|BJ198240.1|BJ198240
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGTGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18363366|gb|BJ195438.1|BJ195438
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGTGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18368961|gb|BJ201046.1|BJ201046
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGANCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18331691|gb|BJ163702.1|BJ163702
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162245549|gb|FC424103.1|FC424103
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162267185|gb|FC442597.1|FC442597
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162230385|gb|FC406949.1|FC406949
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|67698406|gb|BJ958639.1|BJ958639
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18330053|gb|BJ162059.1|BJ162059
EST:     C-C-TCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18326908|gb|BJ158908.1|BJ158908
EST:     CTCGTCATTTCGACGCCACCACGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162274011|gb|FC450358.1|FC450358
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|208393090|gb|DC929585.1|DC929585
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|67574976|gb|BJ947800.1|BJ947800
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18325037|gb|BJ157033.1|BJ157033
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|100399202|gb|BY954251.1|BY954251
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|100400230|gb|BY954373.1|BY954373
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18350200|gb|BJ182251.1|BJ182251
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162242773|gb|FC416412.1|FC416412
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162209056|gb|FC385608.1|FC385608
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162247731|gb|FC423389.1|FC423389
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|100370712|gb|BY948478.1|BY948478
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18350797|gb|BJ182848.1|BJ182848
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18343042|gb|BJ175079.1|BJ175079
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|162221282|gb|FC398092.1|FC398092
EST:     AATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: AATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18329924|gb|BJ161930.1|BJ161930
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
EST: gi|18355633|gb|BJ187692.1|BJ187692
EST:     CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAG                         TTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG
genomic: CTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 79

CTCTTTCGCTCGCACGCCCTCCCGGTTGCAAGCTCTCGCTAGGTCGCGCCCTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgt ... tcatgagcagTTCGTAGCGGATGGAGTCTTCTTTGCGGAGCTGAACGAGCTTCTCACCCGGGAGCTTGCTGAAGATGGGTACTCTGGCGTGGAAGTGCGCGTCACTCCCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTTCGCTCGCACGCCCTCCCGGTTGCAAGCTCTCGCTAGGTCGCGCCCTCGTCATTTCGACGCCACCATGGCCACTCAAATGAGCAAGAAACGAAAGgtgtgtgtgtagccattgttccccgctcatttttgccaatgggttgggatttttttgcttattattctgttttttcatgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA