Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCATCGCTCGCTCGCTCACTGCAACCATGGCGGACAAAGCTTGCACCGTCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacgagttcgtcatttttttctcctctctgcaaggatgtctacgtgagttgcttgagtgttggatttttctcgtattgattatgggaagggcgttctgtttgtgtgtgttggcag

Basic information

species Physcomitrella patens
transcript PP1S450_9V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os01g52490.1 (Oryza sativa), 5'ss of exon 1
-CGGCATCGCTCGCTCGCTCACTGCAACCATGGCGGACAAAGCTTGCACCGTCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacgagttcgtc-----atttttttctcctctctgcaaggatgtctacgtgagttgcttgagtgttggatttttctcgtattgattatgggaagggcgttctgtttgtgtgtgttggcag
 ||||    |||   |  |  | |   ||| ||| |     ||   |||| |||||||||| |||||||||||||||||||| ||  | |||||||||||||| |||| |  || | |      |  | || ||||||  |||    ||| ||  |||| |    |   | |     |       |  | |   ||                               
GCGGC-CAACTCCAGCCATGTCGGACTCCAAGGCCGCGGCGGCGGTCACCCTCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccctgtccattctcaaagctcttcctcctccttgccgccatggctctgtgattgatctctctctctcgctggatgaatccttaccttgcag----------------------------

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G171426_T01 (Zea mays), 5'ss of exon 1
CGGCATCGCTCGCTCGCTCACTGCAACCATGGCGGACAAAGCTTGCACCGTCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacgagttcgtcatttttttctcctctctgcaaggatgtctacgtgagttgcttgagtgttggatttt-tctcgtattgattatgggaagggcgttctgtttgtgtgtgttggcag
||   ||  | |  |  |  | |   ||| |||   |   ||   |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| | |   | | |||        || ||         ||   | |||   |       || | |       ||||  | | | | |  |     | | |  |   | ||| ||| |||
CGCGGTCAGTTGAACCATGGCGGACTCCAAGGCCACCTCGGCGGTCACCCTCCGCACCCGCAAGTTCATGACCAACCGCCTCCTGGCCCGCAAGCAATTCgtaagtggca--tccatcagaccaacatcttcc-------aatccttccgtcgatgctccccgtctcgtcccccatctctcactaaatctttg-----cctgccctccctctgtcttg-cag

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G151252_T01 (Zea mays), 5'ss of exon 1
CGGCATCGCTCGCTCGCTCACTGCAA---CCATGGCGGACAAAGCTTGCACCGTCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacgagttcgtcatttttttctcctctctgcaaggatgtctacgtgagttgcttgagtgttggatttttctcgtattgattatgggaagggcgttctgtttgtgtgtgttggcag
       ||| ||||   ||  ||     ||| |||   |   ||   |||| ||||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| ||||  | | |||         | ||    |||  || || |   | | | |  |  | | |      ||||  | | | | |  |        |||  |      |  | ||||
---TGCGGCTAGCTCAACCATGGCGGACTCCAAGGCCACCTCGGCGGTCACCCTCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacg--tccatcagaccaacaccttc----caatcat-tccatcggtgctccccg--tctcgtccccatctctcactaaatctctgc------ctctcctccctcattcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162261085|gb|FC436946.1|FC436946
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37849254|gb|BJ607262.1|BJ607262
EST:     AAGTTCATGACCANCCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: AAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67720325|gb|BJ970584.1|BJ970584
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67701835|gb|BJ962068.1|BJ962068
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162209966|gb|FC385796.1|FC385796
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37831964|gb|BJ589976.1|BJ589976
EST:     TCCGCACCCGGAAGTTCATGACCAACCACCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18362344|gb|BJ194414.1|BJ194414
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67716746|gb|BJ967006.1|BJ967006
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67712576|gb|BJ966025.1|BJ966025
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67703085|gb|BJ963318.1|BJ963318
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18367776|gb|BJ199859.1|BJ199859
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162270208|gb|FC446284.1|FC446284
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18349465|gb|BJ181514.1|BJ181514
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67716643|gb|BJ966903.1|BJ966903
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67569245|gb|BJ942069.1|BJ942069
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162274827|gb|FC451062.1|FC451062
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162271310|gb|FC446181.1|FC446181
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67725267|gb|BJ975526.1|BJ975526
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67570999|gb|BJ943823.1|BJ943823
EST:     GCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: GCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67575355|gb|BJ948179.1|BJ948179
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162209967|gb|FC385797.1|FC385797
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162241306|gb|FC416937.1|FC416937
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18364861|gb|BJ196934.1|BJ196934
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67578392|gb|BJ950559.1|BJ950559
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18352269|gb|BJ184323.1|BJ184323
EST:     TCCGCACCCGGAAGTTCATGACCAACCACCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|208383593|gb|DC903550.1|DC903550
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18343862|gb|BJ175900.1|BJ175900
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67725655|gb|BJ975914.1|BJ975914
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67701284|gb|BJ961517.1|BJ961517
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37848314|gb|BJ606322.1|BJ606322
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67697255|gb|BJ957488.1|BJ957488
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37846534|gb|BJ604542.1|BJ604542
EST:     CCGGAAGTTCATGACCAACCGCNTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67694304|gb|BJ954537.1|BJ954537
EST:     GGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: GGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67573584|gb|BJ946408.1|BJ946408
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162215279|gb|FC391047.1|FC391047
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67723967|gb|BJ974226.1|BJ974226
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18342708|gb|BJ174743.1|BJ174743
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37827706|gb|BJ585718.1|BJ585718
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162274939|gb|FC450590.1|FC450590
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162247232|gb|FC423056.1|FC423056
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37850471|gb|BJ608479.1|BJ608479
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18338963|gb|BJ170989.1|BJ170989
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162227897|gb|FC403705.1|FC403705
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTTTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67704356|gb|BJ964589.1|BJ964589
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAA
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAA
EST: gi|67717133|gb|BJ967392.1|BJ967392
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67692501|gb|BJ952734.1|BJ952734
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67696970|gb|BJ957203.1|BJ957203
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37827711|gb|BJ585723.1|BJ585723
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18369181|gb|BJ201266.1|BJ201266
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162221852|gb|FC398419.1|FC398419
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67696722|gb|BJ956955.1|BJ956955
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37834640|gb|BJ592652.1|BJ592652
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCATTTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37848979|gb|BJ606987.1|BJ606987
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162261084|gb|FC436945.1|FC436945
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162204520|gb|FC380812.1|FC380812
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162220281|gb|FC396312.1|FC396312
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37836124|gb|BJ594132.1|BJ594132
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67726252|gb|BJ976511.1|BJ976511
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37842061|gb|BJ600069.1|BJ600069
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67573337|gb|BJ946161.1|BJ946161
EST:     TCCGCNCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37821854|gb|BJ579920.1|BJ579920
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18348414|gb|BJ180462.1|BJ180462
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162258722|gb|FC434521.1|FC434521
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18353178|gb|BJ185233.1|BJ185233
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCATTTC                         NTTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37850481|gb|BJ608489.1|BJ608489
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162274826|gb|FC451061.1|FC451061
EST:     CGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37828417|gb|BJ586429.1|BJ586429
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67718904|gb|BJ969163.1|BJ969163
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162227898|gb|FC403706.1|FC403706
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67709889|gb|BJ965705.1|BJ965705
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18349157|gb|BJ181206.1|BJ181206
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67727254|gb|BJ977513.1|BJ977513
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67573867|gb|BJ946691.1|BJ946691
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67717745|gb|BJ968004.1|BJ968004
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162220280|gb|FC396311.1|FC396311
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67724286|gb|BJ974545.1|BJ974545
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162246684|gb|FC425277.1|FC425277
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37851888|gb|BJ609896.1|BJ609896
EST:     CCGCACCCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: CCGCA-CCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|162269282|gb|FC444786.1|FC444786
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37852783|gb|BJ610791.1|BJ610791
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18348408|gb|BJ180456.1|BJ180456
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|67725163|gb|BJ975422.1|BJ975422
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|37823053|gb|BJ581119.1|BJ581119
EST:     AAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: AAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18375201|gb|BJ206779.1|BJ206779
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
EST: gi|18369170|gb|BJ201255.1|BJ201255
EST:     TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTC                         ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG
genomic: TCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 42

CGGCATCGCTCGCTCGCTCACTGCAACCATGGCGGACAAAGCTTGCACCGTCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacg ... gtgttggcagATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCATCGCTCGCTCGCTCACTGCAACCATGGCGGACAAAGCTTGCACCGTCCGCACCCGGAAGTTCATGACCAACCGCCTTCTGGCGCGCAAGCAATTCgtaagcgacgagttcgtcatttttttctcctctctgcaaggatgtctacgtgagttgcttgagtgttggatttttctcgtattgattatgggaagggcgttctgtttgtgtgtgttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA