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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGGACAAAGCTTGCACCGTCCGCACTAGAAAGTTCATGACCAACCGCCTGCTGGCGCGGAAACAATTCgtaagcgcttttgagcttgttcttctggtttttgtcccgtctcaagtttttatgtgattgtccggttttgtttgggtttaggatttgggcgtgtttgggtatttctcaatttttgacctctttcggtgctttggcag

Basic information

species Physcomitrella patens
transcript PP1S450_3V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S450_3V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G151252_T01 (Zea mays), 5'ss of exon 1
----------------------------ATGGCGGACAAAGCTTGCACCGTCCGCACTAGAAAGTTCATGACCAACCGCCTGCTGGCGCGGAAACAATTCgtaagcgcttttgagcttgttcttctggtttttgtcccgtctcaagtttttatgtgattgtccggttttgtttgggtttaggatttgggcgtgtttgggtatttctcaatttttgacctctttcggtgctttggcag
                            | |||   |   ||   |||| |||||||| | |||||||||||||||||||||||||| || |||||||| ||||| |           || | || |        |   ||  |   ||  ||  |     || || | ||     | |   | |    |           |  |||| | ||  |                     
TGCGGCTAGCTCAACCATGGCGGACTCCAAGGCCACCTCGGCGGTCACCCTCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgac---------gtccatcagaccaacacct--tccaatcattccatcggtgctccccgtctcgtccccatctctcactaaatctctgcctctcctccctcattcttgcag--------------------

upper sequence: PP1S450_3V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G171426_T01 (Zea mays), 5'ss of exon 1
----------------------------ATGGCGGACAAAGCTTGCACCGTCCGCACTAGAAAGTTCATGACCAACCGCCTGCTGGCGCGGAAACAATTCgtaagcgcttttgagcttgtt--cttctggtttttgtcccgtctcaagtttttatgtgattgtccggttttgtttgggtttaggatttgggcgtgtttgggtatttctcaatttttgacctctttcggtgctttggcag
                            | |||   |   ||   |||| |||||||  | |||||||||||||||||||| ||||| || || ||||||||||| |   |  | |       | |||     |  | |||||     |     | |  |   ||   | |   |   | |  |  |  | | |   |  || || |                                
CGCGGTCAGTTGAACCATGGCGGACTCCAAGGCCACCTCGGCGGTCACCCTCCGCACCCGCAAGTTCATGACCAACCGCCTCCTGGCCCGCAAGCAATTCgtaagtggcatccatcagaccaacatcttccaatccttccgtcgatgctccccgtctcgtcccccatctctcactaaatctttgcct--gccctccctctgtcttgcag------------------------------