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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCACAGCTCGATGGGGGACAACGAAGGGAGGGATGGCGTGAGGCTGTCTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatcgtgagtaatggggtggtgtttgagtgagtgcatcgcttggggttggtcggaaactgttcaattagagggtttttcaaagtgatgctgggg...

Basic information

species Physcomitrella patens
transcript PP1S450_16V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208398417|gb|DC912346.1|DC912346
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|67718057|gb|BJ968316.1|BJ968316
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|67703527|gb|BJ963760.1|BJ963760
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|100413283|gb|BY956595.1|BY956595
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|100407659|gb|BY991791.1|BY991791
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|100383969|gb|BY987226.1|BY987226
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|18347028|gb|BJ179074.1|BJ179074
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|208398080|gb|DC904385.1|DC904385
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
EST: gi|162207067|gb|FC382181.1|FC382181
EST:     CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAG                         GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG
genomic: CTGCTCGGAATCCCAATGGAGCCTCACCTGCTCTGTACCAGTTCAACCAGgtatggaatc ... tgtaatgcagGCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG