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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGATGTAGGGTTACGGATGAGGGTGTTCATTTCGCTGTAGCAGCAGGTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgcttaggggatgagactttcgttaacattttcttgtatagtagtggatgttggtgcaatttgtgttgatcccaagccggggcagattttggaa...

Basic information

species Physcomitrella patens
transcript PP1S42_19V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179915|gb|FC355986.1|FC355986
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|162176845|gb|FC352833.1|FC352833
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|18349564|gb|BJ181614.1|BJ181614
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|162235107|gb|FC412048.1|FC412048
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|100385165|gb|BY987628.1|BY987628
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|100387249|gb|BY970393.1|BY970393
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTCTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|162179415|gb|FC355415.1|FC355415
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|208399951|gb|DC904991.1|DC904991
EST:     GTGTCCGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|100417500|gb|BY975512.1|BY975512
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|100409786|gb|BY956104.1|BY956104
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|162199414|gb|FC374054.1|FC374054
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|100424379|gb|BY958455.1|BY958455
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACTTATCGAGCCCCCGATTCTGTAACTTAGT
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: gi|100375267|gb|BY948819.1|BY948819
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTTCTGTA-CTTAG
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATT-CTGTAACTTAG
EST: gi|100402902|gb|BY973409.1|BY973409
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGGTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTTCTGTA-CTTTA
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATT-CTGTAACTT-A
EST: gi|22132150|gb|BQ827007.1|BQ827007
EST:     GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG                         GGTTTGATCGGAAGTCGTTCACATATC
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCAAGATGTAGGGTTACGGATGAGGGTGTTCATTTCGCTGTAGCAGCAGGTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgcttaggggatgagactttcgttaacattttcttgtatagtagtggatgttggtgcaatttgtgttgatcccaagccggggcagattttggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT