1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTACGAATGACGATGGGATCAATGCGCCAGGATTACGGGCCTTGGTTGCCGTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttcttcccttgtcaaattcgagaccacccaatagatactgtaaccatggatgactgagtatggtgggagggccaagtgggatttaatatgcttg...
species | Physcomitrella patens |
transcript | PP1S425_16V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTEST: gi|208384789|gb|DC907402.1|DC907402
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTEST: gi|100358086|gb|BY965465.1|BY965465
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTEST: gi|162186160|gb|FC361364.1|FC361364
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTEST: gi|100442509|gb|BY963203.1|BY963203
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTEST: gi|18355551|gb|BJ187610.1|BJ187610
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTEST: gi|18350239|gb|BJ182290.1|BJ182290
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTEST: gi|162265882|gb|FC442885.1|FC442885
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACGAATGACGATGGGATCAATGCGCCAGGATTACGGGCCTTGGTTGCCGTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttcttcccttgtcaaattcgagaccacccaatagatactgtaaccatggatgactgagtatggtgggagggccaagtgggatttaatatgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG