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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCAGCCCTCGCCTACTCACGCACCATCGCTCAATCACACTGTCTTTCCTTCACCAATTTCGgtacatcctttgtcctactttcaatttttccttcacgaagttttttttgttttgagatttagtcatattttgtctgcaagcgatttgaatgattataatt...

Basic information

species Physcomitrella patens
transcript PP1S41_172V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208357473|gb|DC929846.1|DC929846
EST:     CTACTCACGCACCATCGCTCAATCACACTGTCTTTCCTTCACCAATTTCG                         GGTTTCGTGTTGGAGGTTTTTATCTAGAAATTTTGATCAGTCGGGGAACCA
genomic: CTACTCACGCACCATCGCTCAATCACACTGTCTTTCCTTCACCAATTTCGgtacatcctt ... gtttgtgcagGGTTTCGTGTTGGAGGTTTTTATCTAGAAATTTTGATCAGTCGGGGAACCA
EST: gi|162272513|gb|FC447684.1|FC447684
EST:     CTACTCACGCACCATCGCTCAATCACACTGTCTTTCCTTCACCAATTTCG                         GGTTTCGTGTTGGAGGTTTTTATCTAGAAATTTTGATCAGTCGGGGAACCA
genomic: CTACTCACGCACCATCGCTCAATCACACTGTCTTTCCTTCACCAATTTCGgtacatcctt ... gtttgtgcagGGTTTCGTGTTGGAGGTTTTTATCTAGAAATTTTGATCAGTCGGGGAACCA
EST: gi|208397812|gb|DC912021.1|DC912021
EST:     CTACTCACGCACCATCGCTCAATCACACTGTCTTTCCTTCACCAATTTCG                         GGTTTCGTGTTGGAGGTTTTTATCTAGAAATTTTGATCAGTCGGGGAACCA
genomic: CTACTCACGCACCATCGCTCAATCACACTGTCTTTCCTTCACCAATTTCGgtacatcctt ... gtttgtgcagGGTTTCGTGTTGGAGGTTTTTATCTAGAAATTTTGATCAGTCGGGGAACCA