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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGCCCGAGTGCCCAAGAAGGTCCTCCAGTTCGCCGGTATTGAAGATGTATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacctctgtctctccttttagagtcgtaaaggtgattaattcgcgctagtccaaatttctagggtttatcgacgggtcttatgggattgtattaa...

Basic information

species Physcomitrella patens
transcript PP1S411_32V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S411_32V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA08G05090.1 (Glycine max), 5'ss of exon 1
AGCCGCCCGAGTGCCCAAGAAGGTCCTCCAGTTCGCCGGTATTGAAGATGTATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacctctgtctctccttttagagtcgtaaaggtgattaattcgcgctagtccaaatttctagggtttatcgacgggtcttatgggattgtattaa--------
 ||     | || || ||||||||| | |||||||| || || || | ||| |||||||| ||| | || ||||||||||| || ||||||||||| |||||      || | | ||| ||  ||  ||| ||    |  ||||||     |    || || |    | |||||  ||  |  |||||| |  || ||||        
TGCTATTAGGGTTCCAAAGAAGGTCTTGCAGTTCGCTGGAATCGATGGTGTCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattctttttttcttctcataatgtc-tatttttctttaattgattat----cagatatt---gctttattaacttgatttatggtaaggttttaaatctcggt

upper sequence: PP1S411_32V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA05G34570.1 (Glycine max), 5'ss of exon 1
AGCCGCCCGAGTGCCCAAGAAGGTCCTCCAGTTCGCCGGTATTGAAGATGTATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacctctgtctctccttttagagtcgtaaaggtgattaattcgcgctagtccaaatttcta---gggtttatcgacgggtcttatgggattgtattaa
 |||||  | || |||||||||||| | |||||||| || || || || || |||||||| ||  | || ||||||||||| || ||||||||||| |||||   || ||     | | ||| || |    | || ||  ||  || |   || |  |   |   |    | || ||   || |  ||||   |   ||| | 
CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttgttaacttctcttattcttata-atcatttaatgtctttcttttgt-ttaattgattgtctgatatagcttcattatcgtggtttataataagttatca-

upper sequence: PP1S411_32V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA02G09370.1 (Glycine max), 5'ss of exon 1
AGCCGCCCGAGTGCCCAAGAAGGTCCTCCAGTTCGCCGGTATTGAAGATGTATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacctctgtctctccttttagagtcgtaaaggtgattaattcg-cgctagtccaaatttctagggtttatcgacgggtcttatgggattgtattaa-
 || ||  | || ||||||||||| || ||||| || |||||||| ||||| ||||| || ||  | || |||||||| || ||||| || ||||||||||| |||   | ||    || |   ||  |  |     |||    |||  |  |  |  |||||| || ||   |   | || | | ||   | |||   || 
GGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTTGCTGGTATTGATGATGTTTTCACCTCCTCCAGGGGATCCACCAAGACCCTTGGCAACTTCGTTAAGgtttgt--ttttggtattcttacaagtttgctgcttttgacattttcaactatcatgaaaatttttatggacgaattaaggttgtaattccaatgtcacaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162227123|gb|FC403403.1|FC403403
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|208364351|gb|DC950652.1|DC950652
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162169892|gb|FC346248.1|FC346248
EST:     TATTCATTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162175516|gb|FC351766.1|FC351766
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|37833595|gb|BJ591607.1|BJ591607
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162227124|gb|FC403404.1|FC403404
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|208345361|gb|DC917300.1|DC917300
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162249961|gb|FC427062.1|FC427062
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAA-TTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGA-GACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|6166853|gb|AW145117.1|AW145117
EST:     TCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162249960|gb|FC427061.1|FC427061
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|67726755|gb|BJ977014.1|BJ977014
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|67718266|gb|BJ968525.1|BJ968525
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAAACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|208387376|gb|DC949161.1|DC949161
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|37831527|gb|BJ589539.1|BJ589539
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|208366968|gb|DC951455.1|DC951455
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|37824504|gb|BJ582570.1|BJ582570
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162253437|gb|FC430071.1|FC430071
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTG
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTG
EST: gi|208382366|gb|DC927900.1|DC927900
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|208364157|gb|DC950421.1|DC950421
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162214566|gb|FC391533.1|FC391533
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|162253436|gb|FC430070.1|FC430070
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
EST: gi|18341277|gb|BJ173311.1|BJ173311
EST:     TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAG                         GCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC
genomic: TATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacct ... tgatttgcagGCGACATTTGAGTGTCTTTTGAAGACTTACGGTTTCTTGACTCCAGATCTC