1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTATGGCGGACACCGTCATCAAGAAGCGCGTCGAGTTGTTTGAGAAGCTGCAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcggtgggcatggcagggaggggtttggggtttagggatttcataaagtggtgatgagagtgaggcgctgacaacggtgatggtcttgttgctggtgttcggatgatttgatgagagtacttatggtgtag
species | Physcomitrella patens |
transcript | PP1S400_36V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATCEST: gi|100389829|gb|BY971181.1|BY971181
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
EST: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATCEST: gi|18373215|gb|BJ204817.1|BJ204817
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
EST: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATCEST: gi|18375354|gb|BJ206932.1|BJ206932
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
EST: CAGGAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATCEST: gi|18331447|gb|BJ163458.1|BJ163458
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
EST: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATCEST: gi|18357116|gb|BJ189175.1|BJ189175
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
EST: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATCEST: gi|208391427|gb|DC937575.1|DC937575
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
EST: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATCEST: gi|67569369|gb|BJ942193.1|BJ942193
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
EST: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAA GATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
genomic: CAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcg ... tatggtgtagGATTACGATGCCGGATGGAGCTGTGAGGGACGGGAAGAAATGGATCACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGGCGGACACCGTCATCAAGAAGCGCGTCGAGTTGTTTGAGAAGCTGCAGAAGGAGCAGGCCGAGGCGTTTCGGGCGAAGGGCGGGGATCCCATCAAgtgagtggcggtgggcatggcagggaggggtttggggtttagggatttcataaagtggtgatgagagtgaggcgctgacaacggtgatggtcttgttgctggtgttcggatgatttgatgagagtacttatggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG