Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCCAGTCTTTTGGCTGCACCGCTGTCTGCGCTCCGTCCCCATAGTAGGACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagccatcttttcactctctgtcatttccagcttctttctttaccgattacggcgtcgaaatttgaagaaacaagaatttttgtattttagggctt...

Basic information

species Physcomitrella patens
transcript PP1S39_422V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359187|gb|DC934690.1|DC934690
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208360509|gb|DC930264.1|DC930264
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162154350|gb|FC330689.1|FC330689
EST:     CGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: CGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162278196|gb|FC454431.1|FC454431
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162242260|gb|FC416068.1|FC416068
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162276378|gb|FC452134.1|FC452134
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67718472|gb|BJ968731.1|BJ968731
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67508494|gb|BJ941359.1|BJ941359
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|19785991|gb|BQ040424.1|BQ040424
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|19788282|gb|BQ040749.1|BQ040749
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100442819|gb|BY963314.1|BY963314
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208384703|gb|DC915264.1|DC915264
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100401651|gb|BY954638.1|BY954638
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67701936|gb|BJ962169.1|BJ962169
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208372480|gb|DC940769.1|DC940769
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18368491|gb|BJ200576.1|BJ200576
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208387351|gb|DC933102.1|DC933102
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162244481|gb|FC422654.1|FC422654
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162270733|gb|FC446346.1|FC446346
EST:     CGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: CGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208375348|gb|DC940458.1|DC940458
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18328286|gb|BJ160290.1|BJ160290
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67717249|gb|BJ967508.1|BJ967508
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67574528|gb|BJ947352.1|BJ947352
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100431604|gb|BY960281.1|BY960281
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67709828|gb|BJ965644.1|BJ965644
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208352124|gb|DC906269.1|DC906269
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67703238|gb|BJ963471.1|BJ963471
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18330600|gb|BJ162606.1|BJ162606
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67716544|gb|BJ966804.1|BJ966804
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18356288|gb|BJ188347.1|BJ188347
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208372338|gb|DC936468.1|DC936468
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162262040|gb|FC436847.1|FC436847
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18371578|gb|BJ203180.1|BJ203180
EST:     ACCGCCATCTCTCGCCTTCGTGCGANTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTANGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208375314|gb|DC940452.1|DC940452
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208388018|gb|DC933138.1|DC933138
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100410121|gb|BY974421.1|BY974421
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67716220|gb|BJ966480.1|BJ966480
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208353141|gb|DC910150.1|DC910150
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67720011|gb|BJ970270.1|BJ970270
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162274815|gb|FC450842.1|FC450842
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208379834|gb|DC911719.1|DC911719
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208363834|gb|DC943291.1|DC943291
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208391309|gb|DC938199.1|DC938199
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208344652|gb|DC905101.1|DC905101
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18373265|gb|BJ204867.1|BJ204867
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208365611|gb|DC935736.1|DC935736
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208393421|gb|DC942505.1|DC942505
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162259066|gb|FC435151.1|FC435151
EST:     CGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: CGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162258802|gb|FC434809.1|FC434809
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67712701|gb|BJ966150.1|BJ966150
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208387833|gb|DC941402.1|DC941402
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67701993|gb|BJ962226.1|BJ962226
EST:     ACCGCCATCTCTCGCCCTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100387796|gb|BY970541.1|BY970541
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18327413|gb|BJ159415.1|BJ159415
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67701654|gb|BJ961887.1|BJ961887
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100427291|gb|BY959073.1|BY959073
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208374275|gb|DC940660.1|DC940660
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18350121|gb|BJ182172.1|BJ182172
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162220028|gb|FC395374.1|FC395374
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162207391|gb|FC383948.1|FC383948
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67717734|gb|BJ967993.1|BJ967993
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCCAGTCTTTTGGCTGCACCGCTGTCTGCGCTCCGTCCCCATAGTAGGACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagccatcttttcactctctgtcatttccagcttctttctttaccgattacggcgtcgaaatttgaagaaacaagaatttttgtattttagggctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC