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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCAAAGCAAAACCCTTACCGAAGAAGAAAGGAAGGAAGCCGCAGCCATGGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAGgtacttgcgtctcaacctctgctgcggctgctgagttgaaccacttttctgccattctcgcttcgtttggatcgttgcatggtgcgttgctgttgttgcg...

Basic information

species Physcomitrella patens
transcript PP1S395_51V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18365368|gb|BJ197443.1|BJ197443
EST:     CCTTTTACTCGTCCTGCTTTAG                         TTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT
genomic: CCTTTTACTCGTCCTGCTTTAGgtacttgcgt ... ttcttagtagTTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT
EST: gi|208392516|gb|DC933930.1|DC933930
EST:     GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAG                         TTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT
genomic: GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAGgtacttgcgt ... ttcttagtagTTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT
EST: gi|208392081|gb|DC941929.1|DC941929
EST:     GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAGTAG                       
genomic: GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGC-TT--TAGgtacttgcgt ... ttcttagt
EST: gi|18366626|gb|BJ198705.1|BJ198705
EST:     CCTTTTACTCGTCCTGCTTTAG                         TTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT
genomic: CCTTTTACTCGTCCTGCTTTAGgtacttgcgt ... ttcttagtagTTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT
EST: gi|100393226|gb|BY989784.1|BY989784
EST:     GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAGTAG                       
genomic: GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGC-TT--TAGgtacttgcgt ... ttcttagt
EST: gi|18352325|gb|BJ184379.1|BJ184379
EST:     GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAGTAG                       
genomic: GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGC-TT--TAGgtacttgcgt ... ttcttagt
EST: gi|18345392|gb|BJ177435.1|BJ177435
EST:     GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAG                         TTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT
genomic: GGCCACCACCGCCTCGTAGTCAAGACCGCCTTTTACTCGTCCTGCTTTAGgtacttgcgt ... ttcttagtagTTGTGAACAGCAACAAAGCGTGAAAGAGGTCTGTTCTTTCCAAGACGGAGT