Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162231660|gb|FC408253.1|FC408253EST: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|19790383|gb|BQ041845.1|BQ041845EST: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|67570796|gb|BJ943620.1|BJ943620EST: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|162214218|gb|FC390264.1|FC390264EST: TGGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGGGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|162219976|gb|FC396791.1|FC396791EST: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|162231659|gb|FC408252.1|FC408252EST: TGGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|162214219|gb|FC390265.1|FC390265EST: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|67576867|gb|BJ949691.1|BJ949691EST: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|67694094|gb|BJ954327.1|BJ954327EST: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
EST:
gi|67716457|gb|BJ966717.1|BJ966717EST: TCGGCGCCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTT CACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
genomic: TCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
33 (upstream exon),
35 (downstream exon)
Score:
16GGAGAAGACGTTCCGGTTCACCAGACGGAACATCGCTGTGGCGCTCATCTTCGGCGTCGCGGTGCCCTTCTTGACCTACCAGGGCATCACGGGCGAATTTgtaagtgttt ... tctgatgcagCACAAGCAGGATATCGCTGCTGGGCAGCCTCGGCGCAAGTTTTTGGGCACTCAGTAGCCTAGTGGATTGATTAGAACATGCCTTTCATAGGGAAGGATAG
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