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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTCTCTTTCAAGCTTGCCTGTCTCGCGCCGGAGCTTGTCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttcctatcgaagctttcgaatccaacgttttcgttctagttacattataccagatttttctatggcatagctttcccagggtacacgtgatac...

Basic information

species Physcomitrella patens
transcript PP1S38_194V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162203305|gb|FC379584.1|FC379584
EST:     GATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: GATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162233566|gb|FC410948.1|FC410948
EST:     GGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: GGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162203574|gb|FC379060.1|FC379060
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162249702|gb|FC426816.1|FC426816
EST:     GCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: GCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67577870|gb|BJ950037.1|BJ950037
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162272443|gb|FC449069.1|FC449069
EST:     CCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: CCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162258650|gb|FC434345.1|FC434345
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67578018|gb|BJ950185.1|BJ950185
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18358480|gb|BJ190539.1|BJ190539
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162266614|gb|FC441987.1|FC441987
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18361783|gb|BJ193850.1|BJ193850
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162207153|gb|FC382475.1|FC382475
EST:     GCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: GCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162180495|gb|FC356137.1|FC356137
EST:     CATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: CATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67578208|gb|BJ950375.1|BJ950375
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACNTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|100436063|gb|BY979361.1|BY979361
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162276836|gb|FC452518.1|FC452518
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18359386|gb|BJ191447.1|BJ191447
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67569136|gb|BJ941960.1|BJ941960
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162277227|gb|FC453657.1|FC453657
EST:     ATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: ATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162258810|gb|FC434817.1|FC434817
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18329502|gb|BJ161508.1|BJ161508
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67571902|gb|BJ944726.1|BJ944726
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18344088|gb|BJ176127.1|BJ176127
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162272521|gb|FC448511.1|FC448511
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18329501|gb|BJ161507.1|BJ161507
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18327151|gb|BJ159152.1|BJ159152
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18372500|gb|BJ204102.1|BJ204102
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18328914|gb|BJ160920.1|BJ160920
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|208377280|gb|DC902761.1|DC902761
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162235887|gb|FC411630.1|FC411630
EST:     TCTTGTCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162264651|gb|FC441649.1|FC441649
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162201548|gb|FC377430.1|FC377430
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67702402|gb|BJ962635.1|BJ962635
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18349789|gb|BJ181839.1|BJ181839
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCNGCTGCAACCATG                         GCTCGCGGTTTGAAGAANCATTTGAAGAGGCTCAATGCTCCCANACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18342475|gb|BJ174510.1|BJ174510
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18350628|gb|BJ182679.1|BJ182679
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162274060|gb|FC450132.1|FC450132
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162219346|gb|FC395342.1|FC395342
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18345618|gb|BJ177661.1|BJ177661
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18374816|gb|BJ206394.1|BJ206394
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67576103|gb|BJ948927.1|BJ948927
EST:     CCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: CCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18371782|gb|BJ203384.1|BJ203384
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAANCATTTGAAGANGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|67716696|gb|BJ966956.1|BJ966956
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18364145|gb|BJ196218.1|BJ196218
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|18332276|gb|BJ164289.1|BJ164289
EST:     TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162201160|gb|FC377667.1|FC377667
EST:     GATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: GATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|19786886|gb|BQ040554.1|BQ040554
EST:     TCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: TCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162208796|gb|FC384932.1|FC384932
EST:     CTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: CTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
EST: gi|162203095|gb|FC380167.1|FC380167
EST:     CTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG
genomic: CTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 48

CAGCTCTCTTTCAAGCTTGCCTGTCTCGCGCCGGAGCTTGTCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttc ... gtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGGATGCTTGACAAGTTGGGTGGTGCCTTC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCTCTCTTTCAAGCTTGCCTGTCTCGCGCCGGAGCTTGTCTTGCCCATCTCTCTGTGCTGATCGCCTCACACTTCGGCTGCAACCATGgtgagttttcctatcgaagctttcgaatccaacgttttcgttctagttacattataccagatttttctatggcatagctttcccagggtacacgtgatac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT