1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAACGCAGTCTTGCATTTTTCTGCCTTTGTTTCTCATTTATGTGTGCTGTATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggtttctctcccgcccctccgatgctgcgacagatttttgtgacactttagggagtgggaggtgtggtttggtggacatgtgttgctggtcgcgg...
species | Physcomitrella patens |
transcript | PP1S383_1V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|18347993|gb|BJ180040.1|BJ180040
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|67717840|gb|BJ968099.1|BJ968099
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|18346096|gb|BJ178139.1|BJ178139
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: GTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|18347116|gb|BJ179162.1|BJ179162
genomic: GTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT-- -AGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|208387260|gb|DC933011.1|DC933011
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT-- -AGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|100396855|gb|BY953861.1|BY953861
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|100397158|gb|BY972359.1|BY972359
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: TTCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|67702772|gb|BJ963005.1|BJ963005
genomic: -TCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|67717313|gb|BJ967572.1|BJ967572
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|67703834|gb|BJ964067.1|BJ964067
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTEST: gi|18357312|gb|BJ189371.1|BJ189371
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... tgaaatacagCAGCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACGCAGTCTTGCATTTTTCTGCCTTTGTTTCTCATTTATGTGTGCTGTATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggtttctctcccgcccctccgatgctgcgacagatttttgtgacactttagggagtgggaggtgtggtttggtggacatgtgttgctggtcgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG