1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGTCCAGAGTAGGGATTGCTAGGTTAAGGTGAGCTTGAAGCTATGGGGAATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGGgtacgccaatatccgtcattatcgtgcaactttatgtcatcgtgactgtttgcgataaacttgcgtctctatttgttgtttcgcctaataggtttgcctt...
species | Physcomitrella patens |
transcript | PP1S37_304V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGG GTGGTGATGCTTGEST: gi|100394467|gb|BY972083.1|BY972083
genomic: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGGgtacgccaat ... tatctgatagGTGGTGATGCTTG
EST: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGG GTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAGEST: gi|208360587|gb|DC930859.1|DC930859
genomic: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGGgtacgccaat ... tatctgatagGTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAG
EST: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGG GTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAGEST: gi|18362447|gb|BJ194517.1|BJ194517
genomic: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGGgtacgccaat ... tatctgatagGTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAG
EST: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGG GTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAGEST: gi|18365645|gb|BJ197722.1|BJ197722
genomic: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGGgtacgccaat ... tatctgatagGTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAG
EST: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGG GTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAG
genomic: ATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGGgtacgccaat ... tatctgatagGTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTCCAGAGTAGGGATTGCTAGGTTAAGGTGAGCTTGAAGCTATGGGGAATACCTTCCGCAAGCTCTTTGATTCTATCTTCGGCAACAAGGAGATGCGGgtacgccaatatccgtcattatcgtgcaactttatgtcatcgtgactgtttgcgataaacttgcgtctctatttgttgtttcgcctaataggtttgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG