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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGCCTCACCTCCGCTACTCCCCTTTTTCTGCGCCTGACGCCCGTTTGCAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctgcccgtgcgaaccagggttgcttgcttgcttgcaatctctcctctccgcagttcctgttgcgtgaacgcgattaggatgtggtgtggatcg...

Basic information

species Physcomitrella patens
transcript PP1S372_38V6.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208382109|gb|DC903111.1|DC903111
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|67719714|gb|BJ969973.1|BJ969973
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100379823|gb|BY949962.1|BY949962
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100409313|gb|BY991949.1|BY991949
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGTGGTTGAGCAG               
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A----TT---CAGgtaatacctg ...
EST: gi|208355215|gb|DC929732.1|DC929732
EST:     CANGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|18356779|gb|BJ188838.1|BJ188838
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|67717930|gb|BJ968189.1|BJ968189
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100441073|gb|BY980694.1|BY980694
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208368449|gb|DC939926.1|DC939926
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|162250558|gb|FC428461.1|FC428461
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100389258|gb|BY971008.1|BY971008
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100423472|gb|BY958283.1|BY958283
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208376248|gb|DC940960.1|DC940960
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|67709621|gb|BJ965437.1|BJ965437
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|18328168|gb|BJ160172.1|BJ160172
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100354831|gb|BY983587.1|BY983587
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208355826|gb|DC930189.1|DC930189
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100416011|gb|BY957034.1|BY957034
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208377765|gb|DC940877.1|DC940877
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGTGGTTGAGCAG               
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A----TT---CAGgtaatacctg ...
EST: gi|67709704|gb|BJ965520.1|BJ965520
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|18329252|gb|BJ161258.1|BJ161258
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100395288|gb|BY953662.1|BY953662
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208347631|gb|DC912862.1|DC912862
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100388294|gb|BY951896.1|BY951896
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|18358849|gb|BJ190908.1|BJ190908
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGGGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100415348|gb|BY975271.1|BY975271
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208373713|gb|DC936540.1|DC936540
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|162173189|gb|FC349243.1|FC349243
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|67717409|gb|BJ967668.1|BJ967668
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100384225|gb|BY969356.1|BY969356
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100382526|gb|BY969123.1|BY969123
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100380171|gb|BY968883.1|BY968883
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGTGGTTGAGCAG               
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A----TT---CAGgtaatacctg ...
EST: gi|100362829|gb|BY947549.1|BY947549
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100426497|gb|BY958928.1|BY958928
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100359852|gb|BY947154.1|BY947154
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|18357607|gb|BJ189666.1|BJ189666
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100452742|gb|CJ975421.1|CJ975421
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100398101|gb|BY954088.1|BY954088
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208375538|gb|DC937025.1|DC937025
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100403799|gb|BY955107.1|BY955107
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208349366|gb|DC910411.1|DC910411
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208375995|gb|DC906738.1|DC906738
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208362443|gb|DC930976.1|DC930976
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100424068|gb|BY976649.1|BY976649
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100370994|gb|BY985885.1|BY985885
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100418101|gb|BY993336.1|BY993336
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTACTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|67718576|gb|BJ968835.1|BJ968835
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|18330073|gb|BJ162079.1|BJ162079
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208380056|gb|DC914606.1|DC914606
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|67704070|gb|BJ964303.1|BJ964303
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|67718781|gb|BJ969040.1|BJ969040
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100437692|gb|BY979781.1|BY979781
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208363768|gb|DC931092.1|DC931092
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100364063|gb|BY966307.1|BY966307
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208356473|gb|DC938626.1|DC938626
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100418766|gb|BY975729.1|BY975729
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100443303|gb|BY963599.1|BY963599
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100360875|gb|BY965946.1|BY965946
EST:     ATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: ATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100387494|gb|BY988365.1|BY988365
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208360561|gb|DC934459.1|DC934459
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208355467|gb|DC938812.1|DC938812
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208362628|gb|DC939524.1|DC939524
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100357187|gb|BY983737.1|BY983737
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|208380404|gb|DC907729.1|DC907729
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|162156866|gb|FC333020.1|FC333020
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|162190721|gb|FC367607.1|FC367607
EST:     TGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: TGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
EST: gi|100431332|gb|BY960143.1|BY960143
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 31

TGGCGCCTCACCTCCGCTACTCCCCTTTTTCTGCGCCTGACGCCCGTTTGCAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... ggttgagcagGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG




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