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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGCCTCACCTCCGCTACTCCCCTTTTTCTGCGCCTGACGCCCGTTTGCAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctgcccgtgcgaaccagggttgcttgcttgcttgcaatctctcctctccgcagttcctgttgcgtgaacgcgattaggatgtggtgtggatcg...

Basic information

species Physcomitrella patens
transcript PP1S372_38V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377765|gb|DC940877.1|DC940877
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT-C--AGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tcgtgcttagGTGTTGCAAAGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
EST: gi|100409313|gb|BY991949.1|BY991949
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT-C--AGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tcgtgcttagGTGTTGCAAAGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
EST: gi|100417941|gb|BY993260.1|BY993260
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTGTTGCAAAGTGGTTGAGCAGGTCCAAACTAAACCATGACTGATGGTGAG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tcgtgcttagGTGTTGCAAAGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
EST: gi|67703871|gb|BJ964104.1|BJ964104
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         GTGTTGCAAAGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tcgtgcttagGTGTTGCAAAGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
EST: gi|100380171|gb|BY968883.1|BY968883
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT-C--AGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tcgtgcttagGTGTTGCAAAGTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAG