1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCACAGGCACTCGAATGCCTTAGTTGATGTGCTGCCACCTGAAGCTGATTCAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACTgtaagtttgttcgcccctaatttctgctactgttgcaccaatttgtgactccgcaaggtatcgggtatagctcttagcacgtaatttttgaaacttgacg...
species | Physcomitrella patens |
transcript | PP1S36_183V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACT GATATTGGTGGATGTGATATACAAAAACAAGAGATTAGAGAGGCCGTGGAGEST: gi|67727787|gb|BJ978046.1|BJ978046
genomic: CAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACTgtaagtttgt ... gtgagtgcagGATATTGGTGGATGTGATATACAAAAACAAGAGATTAGAGAGGCCGTGGAG
EST: AGCCTGATGTAGCGTATACT GATATTGGTGGATGTGATATACAAAAACCAAGAGATTAGAGAGGCCGTGGAEST: gi|67573064|gb|BJ945888.1|BJ945888
genomic: AGCCTGATGTAGCGTATACTgtaagtttgt ... gtgagtgcagGATATTGGTGGATGTGATATACAAAAA-CAAGAGATTAGAGAGGCCGTGGA
EST: CAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACT GATATTGGTGGATGTGATATACAAAAACAAGAGATTAGAGAGGCCGTGGAGEST: gi|100417305|gb|BY957268.1|BY957268
genomic: CAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACTgtaagtttgt ... gtgagtgcagGATATTGGTGGATGTGATATACAAAAACAAGAGATTAGAGAGGCCGTGGAG
EST: CAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACT GATATTGGTGGATGTGATATACAAAAACAGGAGATTAGAGAGGC
genomic: CAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACTgtaagtttgt ... gtgagtgcagGATATTGGTGGATGTGATATACAAAAACAAGAGATTAGAGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACAGGCACTCGAATGCCTTAGTTGATGTGCTGCCACCTGAAGCTGATTCAAGCATCTCTTTAATGACACAAACCGAGAAGCCTGATGTAGCGTATACTgtaagtttgttcgcccctaatttctgctactgttgcaccaatttgtgactccgcaaggtatcgggtatagctcttagcacgtaatttttgaaacttgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC