1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCGTAATCCTGTAATGTGGCTGAATCTGTTGAGGGTTACGCGGTGTTGATGCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatcaatcatagttgcggactcgtgagggcgccagttgctcccctgctttagtcacaggaagaatgaatgtctgaatatgagtttctagggcgt...
species | Physcomitrella patens |
transcript | PP1S364_48V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGCEST: gi|100443427|gb|BY981854.1|BY981854
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
EST: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGCEST: gi|18356837|gb|BJ188896.1|BJ188896
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
EST: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGCEST: gi|208374277|gb|DC940662.1|DC940662
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
EST: GCGTGAGTTGAGAGTTCANAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCANTGAGGCEST: gi|100443139|gb|BY981765.1|BY981765
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
EST: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGCEST: gi|100443175|gb|BY981801.1|BY981801
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
EST: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGCEST: gi|208376795|gb|DC902962.1|DC902962
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
EST: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGCEST: gi|18329902|gb|BJ161908.1|BJ161908
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
EST: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGNNNNNNNCTGGGTTGCGCGA GGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
genomic: GCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatc ... atatatgcagGGTCCCCACCTGATGATGTTGTAGGGCGCAGGGAAGTAGTATCAGTGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTAATCCTGTAATGTGGCTGAATCTGTTGAGGGTTACGCGGTGTTGATGCGTGAGTTGAGAGTTCAGAAGCTGTGAAGTTTTTTTCTGGGTTGCGCGAgtaagtgatcaatcatagttgcggactcgtgagggcgccagttgctcccctgctttagtcacaggaagaatgaatgtctgaatatgagtttctagggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG