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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCAATCGACTCGCCCATTCACATTCACAGTGTTTTCCACCGCAAAGGCGAGTCTGCAACCCATTGTTTCGATTAGAACAAACCTCAATTCTTACAGgtgggtgaatttccagtttctgctgcgattaggttggagttttttagtttgtggtgaggcagatggtggtcgcggccatgaaattgatgttgaatgcatg...

Basic information

species Physcomitrella patens
transcript PP1S35_49V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67507629|gb|BJ940510.1|BJ940510
EST:     GCGAGTCTGCAACCCATTGTTTCGATTAGAACAAACCTCAATTCTTACAG                         CGAGAGAATGCAGAGTGCCTCCTTTTTAGTTTTGCGCACGCGTCTGAACTT
genomic: GCGAGTCTGCAACCCATTGTTTCGATTAGAACAAACCTCAATTCTTACAGgtgggtgaat ... gctttcacagCGAGAGAATGCAGAGTGCCTCCTTTTTAGTTTTGCGCACGCGTCTGAACTT
EST: gi|100387958|gb|BY970703.1|BY970703
EST:     GCGAGTCTGCAACCCATTGTTTCGATTAGAACAAACCTCAATTCTTACAG                         CGAGAGAATGCAGAGTGCCTCCTTTTTAGTTTTGCGCACGCGTCTGAACTT
genomic: GCGAGTCTGCAACCCATTGTTTCGATTAGAACAAACCTCAATTCTTACAGgtgggtgaat ... gctttcacagCGAGAGAATGCAGAGTGCCTCCTTTTTAGTTTTGCGCACGCGTCTGAACTT